Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov10a16
(651 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g56450.1 68414.m06492 20S proteasome beta subunit G1 (PBG1) (... 106 1e-23
At4g31300.1 68417.m04441 20S proteasome beta subunit A (PBA1) (P... 36 0.018
At5g40580.2 68418.m04925 20S proteasome beta subunit B (PBB2) (P... 35 0.054
At5g40580.1 68418.m04924 20S proteasome beta subunit B (PBB2) (P... 35 0.054
At3g27430.2 68416.m03429 20S proteasome beta subunit B (PBB1) id... 35 0.054
At3g27430.1 68416.m03428 20S proteasome beta subunit B (PBB1) id... 35 0.054
At3g28970.1 68416.m03621 expressed protein contains Pfam domain ... 30 1.2
At3g55140.2 68416.m06124 pectate lyase family protein similar to... 29 3.5
At3g55140.1 68416.m06123 pectate lyase family protein similar to... 29 3.5
At3g14470.1 68416.m01833 disease resistance protein (NBS-LRR cla... 28 6.2
At4g16845.2 68417.m02544 vernalization 2 protein (VRN2) identica... 27 8.2
At4g16845.1 68417.m02543 vernalization 2 protein (VRN2) identica... 27 8.2
At4g05090.1 68417.m00756 inositol monophosphatase family protein... 27 8.2
At1g01620.1 68414.m00079 plasma membrane intrinsic protein 1C (P... 27 8.2
At1g05310.1 68414.m00538 pectinesterase family protein contains ... 25 9.2
>At1g56450.1 68414.m06492 20S proteasome beta subunit G1 (PBG1)
(PRCH) identical to 20S proteasome beta subunit (PBG1)
GI:3421123 [Arabidopsis thaliana]; identical to cDNA
proteasome subunit prch GI:2511597
Length = 246
Score = 106 bits (255), Expect = 1e-23
Identities = 47/128 (36%), Positives = 80/128 (62%)
Frame = +3
Query: 237 PITTTTTVIGVKFDKGCVIAGDTLGSYGSLARFRDCPRVMKVNDLILLGCGGDYADFQYL 416
P T T+++ +K+ G ++A D GSYGS R+++ RV + LLG G+ +DFQ +
Sbjct: 27 PYVTGTSIVAIKYKDGVLMASDMGGSYGSTLRYKNIERVKAIGKHSLLGASGEISDFQEI 86
Query: 417 KDIIQQKIIDERCVGDGLQLKPRSLHCWLTRVLYNKRSKMDPLWNSYVVAGIQDGEPFLG 596
+ + +++ DG L P+ +H +LTRV+YN+R+K +PLWN+ V+ G+++G+ +LG
Sbjct: 87 LRYLDELTLNDNMWDDGNSLGPKEIHNYLTRVMYNRRNKFNPLWNTLVLGGVKNGKSYLG 146
Query: 597 SC**IGNS 620
IG S
Sbjct: 147 MVSMIGVS 154
>At4g31300.1 68417.m04441 20S proteasome beta subunit A (PBA1)
(PRCD) identical to cDNA proteasome subunit prcd
GI:2511593
Length = 233
Score = 36.3 bits (80), Expect = 0.018
Identities = 18/66 (27%), Positives = 34/66 (51%)
Frame = +3
Query: 234 SPITTTTTVIGVKFDKGCVIAGDTLGSYGSLARFRDCPRVMKVNDLILLGCGGDYADFQY 413
+P + TT+IGV ++ G V+ D+ S G R ++ ++ D + + G AD Q
Sbjct: 7 APHSMGTTIIGVTYNGGVVLGADSRTSTGMYVANRASDKITQLTDNVYVCRSGSAADSQV 66
Query: 414 LKDIIQ 431
+ D ++
Sbjct: 67 VSDYVR 72
>At5g40580.2 68418.m04925 20S proteasome beta subunit B (PBB2)
(PRCFC) identical to 20S proteasome beta subunit PBB2
[Arabidopsis thaliana] GI:3421104, cDNA proteasome
subunit prcfc GI:2511575
Length = 274
Score = 34.7 bits (76), Expect = 0.054
Identities = 15/67 (22%), Positives = 34/67 (50%)
Frame = +3
Query: 240 ITTTTTVIGVKFDKGCVIAGDTLGSYGSLARFRDCPRVMKVNDLILLGCGGDYADFQYLK 419
+ T TT++G+ F G ++ DT + G + ++C ++ + I G AD + +
Sbjct: 36 LKTGTTIVGLIFKDGVILGADTRATEGPIVADKNCEKIHYMAPNIYCCGAGTAADTEAVT 95
Query: 420 DIIQQKI 440
D++ ++
Sbjct: 96 DMVSSQL 102
>At5g40580.1 68418.m04924 20S proteasome beta subunit B (PBB2)
(PRCFC) identical to 20S proteasome beta subunit PBB2
[Arabidopsis thaliana] GI:3421104, cDNA proteasome
subunit prcfc GI:2511575
Length = 274
Score = 34.7 bits (76), Expect = 0.054
Identities = 15/67 (22%), Positives = 34/67 (50%)
Frame = +3
Query: 240 ITTTTTVIGVKFDKGCVIAGDTLGSYGSLARFRDCPRVMKVNDLILLGCGGDYADFQYLK 419
+ T TT++G+ F G ++ DT + G + ++C ++ + I G AD + +
Sbjct: 36 LKTGTTIVGLIFKDGVILGADTRATEGPIVADKNCEKIHYMAPNIYCCGAGTAADTEAVT 95
Query: 420 DIIQQKI 440
D++ ++
Sbjct: 96 DMVSSQL 102
>At3g27430.2 68416.m03429 20S proteasome beta subunit B (PBB1)
identical to 20S proteasome beta subunit PBB1 (PBB1)
GB:AAC32066 [Arabidopsis thaliana] (Genetics 149 (2),
677-692 (1998)); contains Pfam profile: PF00227
proteasome A-type and B-type;
Length = 273
Score = 34.7 bits (76), Expect = 0.054
Identities = 15/67 (22%), Positives = 34/67 (50%)
Frame = +3
Query: 240 ITTTTTVIGVKFDKGCVIAGDTLGSYGSLARFRDCPRVMKVNDLILLGCGGDYADFQYLK 419
+ T TT++G+ F G ++ DT + G + ++C ++ + I G AD + +
Sbjct: 36 LKTGTTIVGLIFKDGVILGADTRATEGPIVADKNCEKIHYMAPNIYCCGAGTAADTEAVT 95
Query: 420 DIIQQKI 440
D++ ++
Sbjct: 96 DMVSSQL 102
>At3g27430.1 68416.m03428 20S proteasome beta subunit B (PBB1)
identical to 20S proteasome beta subunit PBB1 (PBB1)
GB:AAC32066 [Arabidopsis thaliana] (Genetics 149 (2),
677-692 (1998)); contains Pfam profile: PF00227
proteasome A-type and B-type;
Length = 267
Score = 34.7 bits (76), Expect = 0.054
Identities = 15/67 (22%), Positives = 34/67 (50%)
Frame = +3
Query: 240 ITTTTTVIGVKFDKGCVIAGDTLGSYGSLARFRDCPRVMKVNDLILLGCGGDYADFQYLK 419
+ T TT++G+ F G ++ DT + G + ++C ++ + I G AD + +
Sbjct: 36 LKTGTTIVGLIFKDGVILGADTRATEGPIVADKNCEKIHYMAPNIYCCGAGTAADTEAVT 95
Query: 420 DIIQQKI 440
D++ ++
Sbjct: 96 DMVSSQL 102
>At3g28970.1 68416.m03621 expressed protein contains Pfam domain
PF03556: Domain of unknown function (DUF298)
Length = 295
Score = 30.3 bits (65), Expect = 1.2
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
Frame = -1
Query: 648 PVRDHSIFIGCSQFINSS---RERVHHPEYRQPHSCSRGDP 535
P +D S+F C + S +E HH +YR+PH+ R P
Sbjct: 185 PNKDTSLFCKCGDTESESCLYQEDEHHKDYRRPHTGLRNIP 225
>At3g55140.2 68416.m06124 pectate lyase family protein similar to
pollen allergen Amb a 1.3 SP:P27761 from [Ambrosia
artemisiifolia]
Length = 307
Score = 28.7 bits (61), Expect = 3.5
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = +3
Query: 462 DGLQLKPRSLHCWLTR 509
DG+Q+KP+S H W+ R
Sbjct: 97 DGIQIKPKSRHIWIDR 112
>At3g55140.1 68416.m06123 pectate lyase family protein similar to
pollen allergen Amb a 1.3 SP:P27761 from [Ambrosia
artemisiifolia]
Length = 331
Score = 28.7 bits (61), Expect = 3.5
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = +3
Query: 462 DGLQLKPRSLHCWLTR 509
DG+Q+KP+S H W+ R
Sbjct: 121 DGIQIKPKSRHIWIDR 136
>At3g14470.1 68416.m01833 disease resistance protein (NBS-LRR class),
putative domain signature NBS-LRR exists, suggestive of a
disease resistance protein.
Length = 1054
Score = 27.9 bits (59), Expect = 6.2
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = -1
Query: 582 HHPEYRQPHSCSRGDPSCSSCCRGHESTSSA 490
HHP++ P S G P R ++S SS+
Sbjct: 1021 HHPQFHLPRSNVSGSPKSHGSHRSYDSRSSS 1051
>At4g16845.2 68417.m02544 vernalization 2 protein (VRN2) identical
to vernalization 2 protein [Arabidopsis thaliana]
gi|16945788|gb|AAL32135
Length = 380
Score = 27.5 bits (58), Expect = 8.2
Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Frame = -2
Query: 614 PNLSTAPEKGFTILNTGNH-IAVPEGIHLA-PLVVEDTSQPAVQRTGLE 474
P+L+ E G +LN GN + PE LA + PA+ + L+
Sbjct: 122 PSLANGTENGIALLNDGNRGLGYPEATELAGQFEMTSNIPPAIAHSSLD 170
>At4g16845.1 68417.m02543 vernalization 2 protein (VRN2) identical
to vernalization 2 protein [Arabidopsis thaliana]
gi|16945788|gb|AAL32135
Length = 440
Score = 27.5 bits (58), Expect = 8.2
Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Frame = -2
Query: 614 PNLSTAPEKGFTILNTGNH-IAVPEGIHLA-PLVVEDTSQPAVQRTGLE 474
P+L+ E G +LN GN + PE LA + PA+ + L+
Sbjct: 182 PSLANGTENGIALLNDGNRGLGYPEATELAGQFEMTSNIPPAIAHSSLD 230
>At4g05090.1 68417.m00756 inositol monophosphatase family protein
low similarity to SP|Q42546 3'(2'),5'-bisphosphate
nucleotidase (EC 3.1.3.7) (DPNPase) {Arabidopsis
thaliana}; contains Pfam profile PF00459: Inositol
monophosphatase family
Length = 397
Score = 27.5 bits (58), Expect = 8.2
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +1
Query: 391 ETMLIFSI*RISFNKKSLMSAVLEMVSSSSPVL 489
E LIF + + SL + +LEM+SS+SP L
Sbjct: 365 ERRLIFPAGGVVVSNGSLHNQILEMISSASPTL 397
>At1g01620.1 68414.m00079 plasma membrane intrinsic protein 1C
(PIP1C) / aquaporin PIP1.3 (PIP1.3) / transmembrane
protein B (TMPB) identical to plasma membrane intrinsic
protein 1c SP:Q08733 from [Arabidopsis thaliana]
Length = 286
Score = 27.5 bits (58), Expect = 8.2
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = +3
Query: 141 PSPGAFYNFPGNASTIAPSRHGVQDFTAHSASPITTTTTVIGVK 272
P P F+ PG S+ + R G+ +F A T TV+GVK
Sbjct: 34 PPPAPFFE-PGELSSWSFYRAGIAEFIATFLFLYITVLTVMGVK 76
>At1g05310.1 68414.m00538 pectinesterase family protein contains
Pfam profile: PF01095 pectinesterase
Length = 393
Score = 24.6 bits (51), Expect(2) = 9.2
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = +2
Query: 194 IQARCTGFYSSLSEPHHDHHNCH 262
I+A F SL + HH HH+ H
Sbjct: 33 IKAISYSFKKSLCDHHHHHHHHH 55
Score = 21.0 bits (42), Expect(2) = 9.2
Identities = 6/9 (66%), Positives = 7/9 (77%)
Frame = +2
Query: 239 HHDHHNCHR 265
HH HH+ HR
Sbjct: 52 HHHHHHHHR 60
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,784,455
Number of Sequences: 28952
Number of extensions: 315324
Number of successful extensions: 997
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 959
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 996
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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