Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10a15
         (676 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1259.09c |||pyruvate dehydrogenase protein x component|Schiz...    50   4e-07
SPCC794.07 |||dihydrolipoamide S-acetyltransferase E2 |Schizosac...    35   0.012
SPBC776.15c |||dihydrolipoamide S-succinyltransferase, e2 compon...    33   0.038
SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces p...    28   1.4  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    27   3.3  
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo...    26   4.3  
SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    26   4.3  
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo...    25   7.6  
SPBC3B9.15c |scp1||sterol regulatory element binding protein Scp...    25   7.6  
SPAC25B8.11 |||transcription factor|Schizosaccharomyces pombe|ch...    25   10.0 

>SPCC1259.09c |||pyruvate dehydrogenase protein x
           component|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 456

 Score = 49.6 bits (113), Expect = 4e-07
 Identities = 32/115 (27%), Positives = 64/115 (55%), Gaps = 1/115 (0%)
 Frame = +2

Query: 335 SLSKELRHFHTSHAVNKIVA-FKLSDIGEGIREVVIKEWFVKVGDNVQQFDNICEVQSDK 511
           SLS + R+FH S A+N + + F++  +   + E  I +W  K GD+ +  D + EV++DK
Sbjct: 18  SLSVKQRYFHCS-ALNGVASMFRMPALSPTMEEGNITKWHFKEGDSFKSGDILLEVETDK 76

Query: 512 AAVTITSRYDGIITRLYHDIDQTALVGQPLVDIDVQDSENDGKPTDVAPDKPVAE 676
           A + +  + +GI+ ++  +      VG+ +    V D+E++ K  ++  D+  +E
Sbjct: 77  ATMDVEVQDNGILAKVLIEKGSNIPVGKNIA--IVADAEDNLKDLELPKDEASSE 129


>SPCC794.07 |||dihydrolipoamide S-acetyltransferase E2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 483

 Score = 34.7 bits (76), Expect = 0.012
 Identities = 14/50 (28%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
 Frame = +2

Query: 455 KVGDNVQQFDNICEVQSDKAAVTITSRYDGIITRLYHDI-DQTALVGQPL 601
           K+GD ++  D +CE+++DKA +    + +G + ++  +   +   VG+PL
Sbjct: 76  KIGDKIEPGDVLCEIETDKAQIDFEQQDEGYLAKILIETGTKDVPVGKPL 125


>SPBC776.15c |||dihydrolipoamide S-succinyltransferase, e2 component
           of oxoglutarate dehydrogenase complex
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 33.1 bits (72), Expect = 0.038
 Identities = 17/74 (22%), Positives = 33/74 (44%)
 Frame = +2

Query: 416 EGIREVVIKEWFVKVGDNVQQFDNICEVQSDKAAVTITSRYDGIITRLYHDIDQTALVGQ 595
           E I E  + +W  + G+ V + + I  V++DK    +T+   G++         T  + Q
Sbjct: 52  ESITEGTLAQWLKQPGEYVNKDEEIASVETDKIDAPVTAPDAGVLKEQLVKEGDTITIDQ 111

Query: 596 PLVDIDVQDSENDG 637
            +  ID   +  +G
Sbjct: 112 DIAVIDTSAAPPEG 125


>SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 480

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 16/48 (33%), Positives = 23/48 (47%)
 Frame = +2

Query: 269 IKVTTQSARNGSQLSYKTPLNESLSKELRHFHTSHAVNKIVAFKLSDI 412
           ++ T Q ARN   L YK  LN      ++      AVN I A+ L+ +
Sbjct: 255 LQQTFQEARNTDPLVYKWVLNFFCKSVVKQAEAEVAVNPISAYPLAKV 302


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 26/93 (27%), Positives = 44/93 (47%), Gaps = 1/93 (1%)
 Frame = -2

Query: 660 SGATSVGFPSFSESCTSISTRGCPTRAV*SISWYSRVMIPSYRLVMVTAALSLCTSQMLS 481
           SG +S   PS   S +SI +    + +  S+S  S     ++     ++  S+ +S   S
Sbjct: 562 SGISSSSIPSTFSSVSSILSSSTSSPSSTSLSISSSSTSSTFSSASTSSPSSISSSISSS 621

Query: 480 NC*TLSPTLTNHSLM-TTSRIPSPISESLKATI 385
           +    SPT +  SLM ++S I S  S  L ++I
Sbjct: 622 STILSSPTPSTSSLMISSSSIISGSSSILSSSI 654


>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1811

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 14/47 (29%), Positives = 25/47 (53%)
 Frame = -1

Query: 595  LSYKSGLINIMVQSCYDTVVSASDGDSCLVALYFANVVELLNIITDF 455
            L+Y S + N++V  C  +VVS+   +     L     ++L++ IT F
Sbjct: 1310 LAYASKIENLLVLQCAISVVSSLGHEHISCVLTQGAYIDLISCITKF 1356


>SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 547

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 10/18 (55%), Positives = 15/18 (83%)
 Frame = -2

Query: 237 NTDLRTRIDIAMKELRTR 184
           NTDLR+R+DI+  +L+ R
Sbjct: 408 NTDLRSRVDISESKLKKR 425


>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase
           Hrp3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1388

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 25/91 (27%), Positives = 41/91 (45%)
 Frame = +2

Query: 263 RKIKVTTQSARNGSQLSYKTPLNESLSKELRHFHTSHAVNKIVAFKLSDIGEGIREVVIK 442
           R  +V TQS  +GSQ+S    + E L K   H +    V +    K++   +G R+ V+K
Sbjct: 627 RNYRVLTQSISSGSQISLLNIVVE-LKKASNHPYLFDGVEESWMQKIN--SQGRRDEVLK 683

Query: 443 EWFVKVGDNVQQFDNICEVQSDKAAVTITSR 535
              +  G  V     +  ++ D   V I S+
Sbjct: 684 GLIMNSGKMVLLDKLLSRLRRDGHRVLIFSQ 714


>SPBC3B9.15c |scp1||sterol regulatory element binding protein
           Scp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1086

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = -2

Query: 432 TSRIPSPISESLKATILLTA*LVWKCLNSLLKLSF 328
           T R+PS I E   +TI+ +   + K L +L  LSF
Sbjct: 323 TKRVPSRIMEGFSSTIIASFSSLLKKLLTLFVLSF 357


>SPAC25B8.11 |||transcription factor|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 654

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = -1

Query: 520 DSCLVALYFANVVELLNIITD-FDEPFLDDDFSYPF 416
           D   V L  A + E+ +   D FD+  LDD  +YP+
Sbjct: 120 DGRQVPLNLAGITEMYHTSDDKFDKLGLDDSLNYPY 155


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,593,485
Number of Sequences: 5004
Number of extensions: 50941
Number of successful extensions: 135
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)