Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov10a15
(676 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_42465| Best HMM Match : 2-oxoacid_dh (HMM E-Value=0) 60 1e-09
SB_10000| Best HMM Match : 2-oxoacid_dh (HMM E-Value=0) 39 0.003
SB_29025| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.28
SB_50447| Best HMM Match : ProQ (HMM E-Value=0.44) 31 0.64
SB_45985| Best HMM Match : IQ (HMM E-Value=1.7e-37) 29 3.4
SB_52816| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.5
SB_8344| Best HMM Match : PA (HMM E-Value=2.4e-19) 28 6.0
SB_1988| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.0
SB_58888| Best HMM Match : Protamine_P1 (HMM E-Value=10) 28 6.0
SB_54938| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.9
SB_26378| Best HMM Match : Transposase_21 (HMM E-Value=2.2e-06) 28 7.9
>SB_42465| Best HMM Match : 2-oxoacid_dh (HMM E-Value=0)
Length = 441
Score = 60.5 bits (140), Expect = 1e-09
Identities = 27/53 (50%), Positives = 41/53 (77%)
Frame = +2
Query: 512 AAVTITSRYDGIITRLYHDIDQTALVGQPLVDIDVQDSENDGKPTDVAPDKPV 670
A+VTITSR+DG+I +LY+++D A VGQPLVDI++ + E+ TD++P + V
Sbjct: 28 ASVTITSRFDGVIKKLYYEVDDIAKVGQPLVDIELSE-ESPSDNTDISPAEDV 79
>SB_10000| Best HMM Match : 2-oxoacid_dh (HMM E-Value=0)
Length = 382
Score = 39.1 bits (87), Expect = 0.003
Identities = 13/41 (31%), Positives = 26/41 (63%)
Frame = +2
Query: 437 IKEWFVKVGDNVQQFDNICEVQSDKAAVTITSRYDGIITRL 559
I W K GD ++ D +CE+++DKA +T+ + G++ ++
Sbjct: 6 IVSWLKKEGDTIEPGDALCEIETDKATLTLDTDEQGVLAKI 46
>SB_29025| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 431
Score = 32.7 bits (71), Expect = 0.28
Identities = 15/49 (30%), Positives = 30/49 (61%)
Frame = +2
Query: 416 EGIREVVIKEWFVKVGDNVQQFDNICEVQSDKAAVTITSRYDGIITRLY 562
E + E I+ W VGD V + + + E+++DK ++ +T+ +G+I L+
Sbjct: 57 ESVTEGDIR-WDQAVGDAVAEDEVVGEIETDKTSIPVTAPANGVIEELF 104
>SB_50447| Best HMM Match : ProQ (HMM E-Value=0.44)
Length = 295
Score = 31.5 bits (68), Expect = 0.64
Identities = 24/100 (24%), Positives = 46/100 (46%), Gaps = 11/100 (11%)
Frame = +2
Query: 401 LSDIGEGIREVVIKEWFVKVGDNVQQ--FDNICEVQSDKAAVTITSRYDGIITRLYHDID 574
L D+ E + WF ++ +NV + FD++C + S VT+ +G + +
Sbjct: 152 LEDVLEAAENFRVS-WFNRIDENVYEPSFDDVCSMMSVITRVTLLEHINGTFSLPKKHVR 210
Query: 575 QT------ALV---GQPLVDIDVQDSENDGKPTDVAPDKP 667
QT AL+ G+ +VD +D ++D ++ + P
Sbjct: 211 QTKKLLREALMAERGEQIVDETDEDDDDDEDDDEIEEEPP 250
>SB_45985| Best HMM Match : IQ (HMM E-Value=1.7e-37)
Length = 942
Score = 29.1 bits (62), Expect = 3.4
Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = -1
Query: 268 FPAPVHGSQLEYRSTNKNRHCYERTKNT-NF 179
FP + +E + N +HCYERTK T NF
Sbjct: 100 FPKATDFTLVEKFNNNIKQHCYERTKETENF 130
>SB_52816| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1622
Score = 28.7 bits (61), Expect = 4.5
Identities = 12/25 (48%), Positives = 20/25 (80%), Gaps = 1/25 (4%)
Frame = +3
Query: 123 LSCDRD-RTQGSRHALYNYLKFVFL 194
LSC+++ ++ + HALY++ KFVFL
Sbjct: 1198 LSCEKETQSYKASHALYHFSKFVFL 1222
>SB_8344| Best HMM Match : PA (HMM E-Value=2.4e-19)
Length = 380
Score = 28.3 bits (60), Expect = 6.0
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = -3
Query: 344 CLSFHSKAFCKIAVIRFSHFASSP*FSGTGSRFSVGI 234
CL+ S AFC + V+R+ F+S P +GT + + +
Sbjct: 8 CLASASPAFCLLFVLRY--FSSVPRLAGTNGSYQLAL 42
>SB_1988| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3889
Score = 28.3 bits (60), Expect = 6.0
Identities = 22/59 (37%), Positives = 27/59 (45%)
Frame = +2
Query: 467 NVQQFDNICEVQSDKAAVTITSRYDGIITRLYHDIDQTALVGQPLVDIDVQDSENDGKP 643
NV DN+ + + A + SR D +IT D QT VG V I V D ND P
Sbjct: 2619 NVFSIDNLTGLVTTAAKLDRESRDDYVITVQATDNGQTPRVGYTSVVIHVTDI-NDNAP 2676
>SB_58888| Best HMM Match : Protamine_P1 (HMM E-Value=10)
Length = 158
Score = 28.3 bits (60), Expect = 6.0
Identities = 19/54 (35%), Positives = 23/54 (42%)
Frame = +2
Query: 500 QSDKAAVTITSRYDGIITRLYHDIDQTALVGQPLVDIDVQDSENDGKPTDVAPD 661
QS V+ SR+D T+ HD D T Q D D S +D PT D
Sbjct: 100 QSQHFTVSTQSRHDTDTTQSRHDTDST----QSRYDTDSTQSRHDTNPTQSRHD 149
>SB_54938| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 66
Score = 27.9 bits (59), Expect = 7.9
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = +1
Query: 469 CSTIRQHLRSTKRQGSCHH 525
C T HLR TKR G HH
Sbjct: 16 CLTALAHLRETKRHGKRHH 34
>SB_26378| Best HMM Match : Transposase_21 (HMM E-Value=2.2e-06)
Length = 854
Score = 27.9 bits (59), Expect = 7.9
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Frame = +2
Query: 269 IKVTTQSARNGSQLSYKTPLN-ESLSKELRHF-HTSHAVNKIVAFKLSDI 412
IKV +ARN L+ TPL + H A++K+V F +SDI
Sbjct: 773 IKVNVGAARNVHYLAIATPLECPCYNPSSTHITSVKRAMDKLVVFNISDI 822
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,728,039
Number of Sequences: 59808
Number of extensions: 398603
Number of successful extensions: 1085
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 977
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1085
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1733301648
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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