Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov10a12
(635 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC11G11.03 |||60S acidic ribosomal protein |Schizosaccharomyce... 146 3e-36
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 32 0.060
SPCC1235.04c |||FAD synthetase|Schizosaccharomyces pombe|chr 3||... 29 0.56
SPAC637.06 |||alpha-1,2-galactosyltransferase |Schizosaccharomyc... 29 0.74
SPAC1093.03 |||inositol polyphosphate phosphatase |Schizosacchar... 27 1.7
SPCC1682.05c |||signal recognition particle subunit |Schizosacch... 27 2.3
SPBC12C2.09c |||Haemolysin-III family protein|Schizosaccharomyce... 26 4.0
SPAC3A11.09 |sod22||plasma membrane alkali metal cation/H+ antip... 26 4.0
SPAC22G7.08 |ppk8||serine/threonine protein kinase Ppk8 |Schizos... 26 5.2
SPBC405.01 |ade1|min4, SPBC4C3.02c|phosphoribosylamine-glycine l... 25 6.9
SPAC5D6.06c |||UDP-GlcNAc transferase associated protein Alg14|S... 25 9.1
SPAC222.07c |hri2||eIF2 alpha kinase Hri2|Schizosaccharomyces po... 25 9.1
>SPBC11G11.03 |||60S acidic ribosomal protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 241
Score = 146 bits (353), Expect = 3e-36
Identities = 73/179 (40%), Positives = 112/179 (62%), Gaps = 12/179 (6%)
Frame = +1
Query: 130 MPKSKRDKKVSLTKTNKKGLVHKQKVIEEIRNSLSKYEHIFLFTINNMRNTKLKDLRNDW 309
MPKS+R K ++L +T KKG K + ++ SL ++++++F + NMRNT LK +R+DW
Sbjct: 1 MPKSRRSKVLTLAQTEKKGHEGKAALFSGVQQSLDSFDYMWIFDVTNMRNTYLKRIRDDW 60
Query: 310 KDSRFFFGKNKVMAIALGKTKSDEIEEQLNLLSKKLKGQCGLLMTNRDVPDVLNWFKSYQ 489
K SR F GK KVMA ALG T +E E ++ L+K L G GLL TN +V+ +F+S+
Sbjct: 61 KGSRIFMGKTKVMAKALGHTPEEEHAENVSKLTKLLHGAVGLLFTNSKPDEVIGYFESFV 120
Query: 490 ASEYARAGFIATKDVLLPKGPLAD------------FSHTIEPHLRRLGLPTSLEKGVI 630
+++ARAG +A ++P GP+ +HT+EP +R+LG+PT L+ GV+
Sbjct: 121 QNDFARAGAVAPFTHVIPAGPVYSRAGQIPVEDDILLTHTLEPQVRQLGMPTVLKNGVV 179
>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 4924
Score = 32.3 bits (70), Expect = 0.060
Identities = 28/98 (28%), Positives = 44/98 (44%)
Frame = -1
Query: 335 FPKKNLESFQSFRRSFNFVFLMLLMVNKNMCSYLLSEFLISSMTFCLCTKPFLLVFVSDT 156
FP+ L S ++ R++ F + + S+ SE L++++ +C K F V
Sbjct: 684 FPR--LASGKTDRKALKIQFSASDKHSTDFSSFNQSELLVANVLHEICEKRFNSVVSISR 741
Query: 155 FLSLFDFGIFVLLFYYGKDKIYNLISSAISKITCTGFV 42
F S+FD G+ L Y KI +L A I T V
Sbjct: 742 FSSIFDLGLDSLDIVYFVRKIRSLGFEANPSIVLTSKV 779
>SPCC1235.04c |||FAD synthetase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 265
Score = 29.1 bits (62), Expect = 0.56
Identities = 27/91 (29%), Positives = 41/91 (45%), Gaps = 1/91 (1%)
Frame = -1
Query: 404 NRFSCSSISSLLV-LPRAIAITLFFPKKNLESFQSFRRSFNFVFLMLLMVNKNMCSYLLS 228
N F+ S+ S LV L ++I+L F + E++Q R + +F +V +C Y L
Sbjct: 13 NIFTHSAPSEKLVGLQNRLSISLRFIEYAFETYQPERLAMSFNGGKDCLVLFLLCIYYLK 72
Query: 227 EFLISSMTFCLCTKPFLLVFVSDTFLSLFDF 135
E L PF+ V D F + DF
Sbjct: 73 EKYKEQAQAKLSNIPFVFVRPRDEFPEMDDF 103
>SPAC637.06 |||alpha-1,2-galactosyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 347
Score = 28.7 bits (61), Expect = 0.74
Identities = 16/50 (32%), Positives = 23/50 (46%)
Frame = -2
Query: 421 LLIFLITDLVALLFHHSWSYQEQ*PLLYFFQKRIWNPSNHSVGPLILYFS 272
L+ FL +V H W + EQ + YF++ W S PL L+ S
Sbjct: 237 LMDFLWDPVVYGQKHMDWPHDEQNAIEYFYENNAWLRSGMGFVPLRLFNS 286
>SPAC1093.03 |||inositol polyphosphate phosphatase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 832
Score = 27.5 bits (58), Expect = 1.7
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Frame = -1
Query: 422 PFNFFDNRFSCSSISSL--LVLPRAIAITLFFPKKNLESFQSFRRSF 288
P N+FDN ++ +SISS ++LP I+ F P L R+SF
Sbjct: 604 PANYFDNVYTPNSISSFSEVLLPNLISTLNFAP---LSLIPLLRKSF 647
>SPCC1682.05c |||signal recognition particle subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 597
Score = 27.1 bits (57), Expect = 2.3
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = -1
Query: 455 TSLFVISNPH*PFNFFDNRFSCSSISSL-LVLPRAIAITLF 336
TSL +I+ + P NF D+R C ++S++ L L LF
Sbjct: 9 TSLVIIAFRYLPNNFNDSRLGCDNLSTVGLCLKNGTGEVLF 49
>SPBC12C2.09c |||Haemolysin-III family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 324
Score = 26.2 bits (55), Expect = 4.0
Identities = 14/49 (28%), Positives = 22/49 (44%)
Frame = -1
Query: 239 YLLSEFLISSMTFCLCTKPFLLVFVSDTFLSLFDFGIFVLLFYYGKDKI 93
Y++S + S +F LC K V + FG V LF+ K ++
Sbjct: 63 YIISGYRPPSFSFYLCVKSIFHVHNESVNIWTHLFGAIVFLFFIFKSEL 111
>SPAC3A11.09 |sod22||plasma membrane alkali metal cation/H+
antiporter Sod22|Schizosaccharomyces pombe|chr
1|||Manual
Length = 759
Score = 26.2 bits (55), Expect = 4.0
Identities = 14/51 (27%), Positives = 24/51 (47%)
Frame = +1
Query: 433 LLMTNRDVPDVLNWFKSYQASEYARAGFIATKDVLLPKGPLADFSHTIEPH 585
+L+ VPD++NW ++ A + G A L+ + L S EP+
Sbjct: 345 VLLFKSFVPDIINWREALFAGHFGPIGVGALYTCLVARAELEVHSTVPEPN 395
>SPAC22G7.08 |ppk8||serine/threonine protein kinase Ppk8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 513
Score = 25.8 bits (54), Expect = 5.2
Identities = 11/42 (26%), Positives = 23/42 (54%)
Frame = +1
Query: 454 VPDVLNWFKSYQASEYARAGFIATKDVLLPKGPLADFSHTIE 579
+ + L +SY +Y+R+ + T LP+ + F+++IE
Sbjct: 30 ISNYLKPVRSYPYIKYSRSSLLLTASTTLPENFVISFTNSIE 71
>SPBC405.01 |ade1|min4, SPBC4C3.02c|phosphoribosylamine-glycine
ligase |Schizosaccharomyces pombe|chr 2|||Manual
Length = 788
Score = 25.4 bits (53), Expect = 6.9
Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Frame = +1
Query: 514 FIATKDV-LLPKGPLADFSHTIEPHLRRLGLP 606
F KDV L+ GP IE H RR+G+P
Sbjct: 65 FALDKDVNLVIPGPELPLVEGIEGHFRRVGIP 96
>SPAC5D6.06c |||UDP-GlcNAc transferase associated protein
Alg14|Schizosaccharomyces pombe|chr 1|||Manual
Length = 210
Score = 25.0 bits (52), Expect = 9.1
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = -3
Query: 579 LNSV*KIC*RTFG**NIFCCNEASSCIF*CLITF 478
L S+ I FG ++ CN +C+F CL+ +
Sbjct: 119 LGSISVIFWNPFGIPDVILCNGPGTCVFICLLGY 152
>SPAC222.07c |hri2||eIF2 alpha kinase Hri2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 639
Score = 25.0 bits (52), Expect = 9.1
Identities = 25/91 (27%), Positives = 39/91 (42%), Gaps = 1/91 (1%)
Frame = +1
Query: 202 KVIEEIRNSLSKYEHIFLFTINNMRNTKLKDLRNDWKDSRFFFGKNKVMAIALGKTKSDE 381
K I+ + +E + F N R TKL+DLR F ++ L T D
Sbjct: 513 KKIDTFSLGMVLFELLHPFQTNMERATKLQDLRRGNLPEEFVEQHICESSLILWMTAKDP 572
Query: 382 IEEQLNLLSKKLKGQCGLLMTNR-DVPDVLN 471
+ +LL CGLL+ N+ +P++ N
Sbjct: 573 TKRP-SLLEVL---NCGLLLPNQVSMPNISN 599
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,653,979
Number of Sequences: 5004
Number of extensions: 56539
Number of successful extensions: 199
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 198
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -