Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10a12
         (635 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41264-4|AAA82424.1|  220|Caenorhabditis elegans Hypothetical pr...   175   2e-44
Z81453-6|CAH04639.1|  283|Caenorhabditis elegans Hypothetical pr...    30   1.6  
Z70213-9|CAA94177.1| 1520|Caenorhabditis elegans Hypothetical pr...    30   1.6  
Z49069-5|CAA88867.1| 1520|Caenorhabditis elegans Hypothetical pr...    30   1.6  
AF025458-1|AAB70977.2|  384|Caenorhabditis elegans Hypothetical ...    29   2.1  
Z99771-2|CAB16920.1| 1130|Caenorhabditis elegans Hypothetical pr...    29   2.8  
Z66513-16|CAA91339.1| 1130|Caenorhabditis elegans Hypothetical p...    29   2.8  
U21317-9|AAA62530.3|  355|Caenorhabditis elegans Serpentine rece...    29   2.8  
L12018-2|AAK68341.1|  525|Caenorhabditis elegans G protein regul...    29   3.7  
U97000-8|AAC47999.1|  347|Caenorhabditis elegans Seven tm recept...    28   4.9  
AL132853-3|CAB60438.1|  859|Caenorhabditis elegans Hypothetical ...    28   4.9  
U00048-7|AAB53831.2|  752|Caenorhabditis elegans Hypothetical pr...    27   8.5  
AL110479-1|CAB60310.2|  311|Caenorhabditis elegans Hypothetical ...    27   8.5  
AF047655-9|AAC04395.1|  313|Caenorhabditis elegans Hypothetical ...    27   8.5  

>U41264-4|AAA82424.1|  220|Caenorhabditis elegans Hypothetical
           protein F10E7.5 protein.
          Length = 220

 Score =  175 bits (426), Expect = 2e-44
 Identities = 85/168 (50%), Positives = 118/168 (70%), Gaps = 1/168 (0%)
 Frame = +1

Query: 130 MPKSKRDKKVSLTKTNKKGLVHKQKVIEEIRNSLSKYEHIFLFTINNMRNTKLKDLRNDW 309
           M +S+RDK VSLTK  KK    K  ++ E+R S+ +Y+++F+FTI NMR+T+   +R  +
Sbjct: 1   MARSRRDKNVSLTKVKKKTKDTKNNLVNEVRASVDQYKNLFIFTIANMRSTRFIAIRQKY 60

Query: 310 KD-SRFFFGKNKVMAIALGKTKSDEIEEQLNLLSKKLKGQCGLLMTNRDVPDVLNWFKSY 486
           K+ SRFFFGKN V++IALGK KSDE   QL+  S  LKGQCGL+ TN    +V   F   
Sbjct: 61  KENSRFFFGKNNVISIALGKQKSDEYANQLHKASAILKGQCGLMFTNMSKKEVEAEFSEA 120

Query: 487 QASEYARAGFIATKDVLLPKGPLADFSHTIEPHLRRLGLPTSLEKGVI 630
              +YAR G +AT+ V+LP+GP++ F+ ++EP LR+LGLPT L+KGVI
Sbjct: 121 SEEDYARVGDVATETVVLPEGPISQFAFSMEPQLRKLGLPTKLDKGVI 168


>Z81453-6|CAH04639.1|  283|Caenorhabditis elegans Hypothetical
           protein B0250.10 protein.
          Length = 283

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 27/90 (30%), Positives = 45/90 (50%), Gaps = 3/90 (3%)
 Frame = -1

Query: 482 LLNQFSTSGTSLFVISNPH*PFNFFDNRFSCSSISSLLVLPRAI--AITLFFPKKNLESF 309
           LL Q ST     F+I N H  F+      S  ++ S+L L  A+   I ++FP      F
Sbjct: 67  LLTQISTD----FIIKNVH--FSLVIPAASIGNMRSVLTLLIALERVIAIYFPI----FF 116

Query: 308 QSFRRSF-NFVFLMLLMVNKNMCSYLLSEF 222
             +R+   NFVFL++++ ++    Y++  F
Sbjct: 117 HIYRQKLPNFVFLLIILTSELFNQYMIFGF 146


>Z70213-9|CAA94177.1| 1520|Caenorhabditis elegans Hypothetical
           protein K12D12.1 protein.
          Length = 1520

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 17/43 (39%), Positives = 24/43 (55%)
 Frame = +1

Query: 127 NMPKSKRDKKVSLTKTNKKGLVHKQKVIEEIRNSLSKYEHIFL 255
           +M  ++ D+ V  T  +KKG   KQ  IE+I    S+ EHI L
Sbjct: 37  SMVMTEEDRNV-FTSIDKKGGGSKQMAIEDIYQKKSQLEHILL 78


>Z49069-5|CAA88867.1| 1520|Caenorhabditis elegans Hypothetical
           protein K12D12.1 protein.
          Length = 1520

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 17/43 (39%), Positives = 24/43 (55%)
 Frame = +1

Query: 127 NMPKSKRDKKVSLTKTNKKGLVHKQKVIEEIRNSLSKYEHIFL 255
           +M  ++ D+ V  T  +KKG   KQ  IE+I    S+ EHI L
Sbjct: 37  SMVMTEEDRNV-FTSIDKKGGGSKQMAIEDIYQKKSQLEHILL 78


>AF025458-1|AAB70977.2|  384|Caenorhabditis elegans Hypothetical
           protein C01B12.4 protein.
          Length = 384

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 18/47 (38%), Positives = 26/47 (55%)
 Frame = -1

Query: 173 VFVSDTFLSLFDFGIFVLLFYYGKDKIYNLISSAISKITCTGFVDLL 33
           VFV+ TFLS F F +F +L Y   ++I N + + I     T F  L+
Sbjct: 42  VFVAITFLSSF-FHLFFVLKYVSNERIRNDMYALIFMFPITTFASLV 87


>Z99771-2|CAB16920.1| 1130|Caenorhabditis elegans Hypothetical
           protein F54D5.14 protein.
          Length = 1130

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 20/77 (25%), Positives = 35/77 (45%), Gaps = 4/77 (5%)
 Frame = +1

Query: 364 KTKSDE---IEEQLNLLSKKLKGQCGLLMTNRDVP-DVLNWFKSYQASEYARAGFIATKD 531
           K K +E   I+  +N L +K++     +  +R    D +N F S+ A          ++ 
Sbjct: 429 KRKEEEKYTIQRDINQLRRKIEQDMETMRRSRATKKDAINKFGSHMAEILMEINRSKSRF 488

Query: 532 VLLPKGPLADFSHTIEP 582
             +PKGPL  +   I+P
Sbjct: 489 QTVPKGPLGKYITLIDP 505


>Z66513-16|CAA91339.1| 1130|Caenorhabditis elegans Hypothetical
           protein F54D5.14 protein.
          Length = 1130

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 20/77 (25%), Positives = 35/77 (45%), Gaps = 4/77 (5%)
 Frame = +1

Query: 364 KTKSDE---IEEQLNLLSKKLKGQCGLLMTNRDVP-DVLNWFKSYQASEYARAGFIATKD 531
           K K +E   I+  +N L +K++     +  +R    D +N F S+ A          ++ 
Sbjct: 429 KRKEEEKYTIQRDINQLRRKIEQDMETMRRSRATKKDAINKFGSHMAEILMEINRSKSRF 488

Query: 532 VLLPKGPLADFSHTIEP 582
             +PKGPL  +   I+P
Sbjct: 489 QTVPKGPLGKYITLIDP 505


>U21317-9|AAA62530.3|  355|Caenorhabditis elegans Serpentine
           receptor, class e (epsilon)protein 1 protein.
          Length = 355

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 20/91 (21%), Positives = 41/91 (45%)
 Frame = -1

Query: 356 AIAITLFFPKKNLESFQSFRRSFNFVFLMLLMVNKNMCSYLLSEFLISSMTFCLCTKPFL 177
           A+A   FF    +E+++  +R +  +FL         CS       +S++       PF 
Sbjct: 121 AVAFERFFATYFVETYEKKKRKWISLFL---------CSEFTVACGVSAIVMLYDLLPFA 171

Query: 176 LVFVSDTFLSLFDFGIFVLLFYYGKDKIYNL 84
           ++     F+S   F  +++LFY  K +++ +
Sbjct: 172 VMAFLGVFISCASFLFYLVLFYMNKRRLHTI 202


>L12018-2|AAK68341.1|  525|Caenorhabditis elegans G protein
           regulator protein 1 protein.
          Length = 525

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = -2

Query: 469 SVHQAHLYLSLAIHTDLLIFLITDLVALLFH 377
           +VH A+   +L   TDLL F+I DL + LF+
Sbjct: 225 AVHIAYYDKALYAETDLLFFIIRDLRSALFY 255


>U97000-8|AAC47999.1|  347|Caenorhabditis elegans Seven tm receptor
           protein 136 protein.
          Length = 347

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = +3

Query: 513 LHCNKRCFITQRSSSRFFTHY*ATFKTFGLTYISRKRCY 629
           LHC    F+    S +FF  Y A  KT  L Y+  K+ +
Sbjct: 98  LHCVLTGFVASLLSCQFFYRYVALCKTHLLVYLQGKKLF 136


>AL132853-3|CAB60438.1|  859|Caenorhabditis elegans Hypothetical
           protein Y80D3A.7 protein.
          Length = 859

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 18/61 (29%), Positives = 32/61 (52%)
 Frame = -1

Query: 287 NFVFLMLLMVNKNMCSYLLSEFLISSMTFCLCTKPFLLVFVSDTFLSLFDFGIFVLLFYY 108
           NFV   + MV+ N+ + ++SE +   +TF L     + +F +   L   +FG+F  L  +
Sbjct: 643 NFVDQTVDMVD-NIWNTVISEVICMGLTFILFIPDLISIFSAVFALFSVNFGVFGFLSIW 701

Query: 107 G 105
           G
Sbjct: 702 G 702


>U00048-7|AAB53831.2|  752|Caenorhabditis elegans Hypothetical
           protein C05D11.9 protein.
          Length = 752

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +1

Query: 193 HKQKVIEEIRNSLSKYEHIFLFTI 264
           HK K +  +RNS SKY H    TI
Sbjct: 722 HKSKTVVMVRNSTSKYYHPAYVTI 745


>AL110479-1|CAB60310.2|  311|Caenorhabditis elegans Hypothetical
           protein Y105C5B.1 protein.
          Length = 311

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 12/40 (30%), Positives = 28/40 (70%)
 Frame = -1

Query: 284 FVFLMLLMVNKNMCSYLLSEFLISSMTFCLCTKPFLLVFV 165
           F+FL++++V  ++ S+LLS  ++ S+   L  + FL++++
Sbjct: 104 FIFLIMMLVESSLGSFLLSCIVLLSLLAFL--QRFLIIYI 141


>AF047655-9|AAC04395.1|  313|Caenorhabditis elegans Hypothetical
           protein C17B7.11 protein.
          Length = 313

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 10/24 (41%), Positives = 18/24 (75%)
 Frame = +3

Query: 126 KYAEIKKG*ESITYKNQQKRFSTQ 197
           KY+++  G  ++TYK+Q+KRF  +
Sbjct: 82  KYSDVDNG-TTVTYKDQEKRFENE 104


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,399,103
Number of Sequences: 27780
Number of extensions: 308887
Number of successful extensions: 974
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 920
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 973
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1406256614
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)