Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10a11
         (470 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1...    37   0.001
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    31   0.089
SPAC4D7.05 |sum1|tif34|translation initiation factor eIF3i|Schiz...    29   0.36 
SPBC106.11c |plg7||phospholipase A2 |Schizosaccharomyces pombe|c...    27   1.4  
SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Ma...    27   1.9  
SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe...    25   4.4  
SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces...    25   4.4  
SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA reductase|Schi...    25   5.8  
SPBC16G5.15c |fkh2||fork head transcription factor Fkh2 |Schizos...    25   7.7  
SPAC21E11.06 |tif224||translation initiation factor eIF2B delta ...    25   7.7  
SPBC30B4.04c |sol1||SWI/SNF complex subunit Sol1|Schizosaccharom...    25   7.7  
SPAC1F8.05 |isp3|meu4|sequence orphan|Schizosaccharomyces pombe|...    25   7.7  

>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 857

 Score = 37.1 bits (82), Expect = 0.001
 Identities = 17/49 (34%), Positives = 21/49 (42%)
 Frame = -3

Query: 381 EPPHPQVGPHAPEMETEPTAQAGPANSTAPMTGTCPVTPVEPATGSSPA 235
           +PP   V P AP +   P A   P   +AP     PV P  P+    PA
Sbjct: 516 QPPAAPVVPEAPSVHQPPAAPVAPEVPSAPQRPAAPVVPEAPSVPQRPA 564



 Score = 36.3 bits (80), Expect = 0.002
 Identities = 18/46 (39%), Positives = 20/46 (43%)
 Frame = -3

Query: 375 PHPQVGPHAPEMETEPTAQAGPANSTAPMTGTCPVTPVEPATGSSP 238
           P P V P APE+ + P     P    AP     PV PV P   S P
Sbjct: 575 PQPPVAPVAPEVPSVPQPPVAPVVPEAPSVPQPPVAPVAPEVPSVP 620



 Score = 34.7 bits (76), Expect = 0.007
 Identities = 18/46 (39%), Positives = 20/46 (43%)
 Frame = -3

Query: 375 PHPQVGPHAPEMETEPTAQAGPANSTAPMTGTCPVTPVEPATGSSP 238
           P P V P APE+ + P   A P    AP     P  PV P   S P
Sbjct: 605 PQPPVAPVAPEVPSVPQRPAVPVVPEAPSVPQPPAAPVVPEVPSVP 650



 Score = 31.5 bits (68), Expect = 0.067
 Identities = 16/46 (34%), Positives = 18/46 (39%)
 Frame = -3

Query: 375 PHPQVGPHAPEMETEPTAQAGPANSTAPMTGTCPVTPVEPATGSSP 238
           P P   P  PE+ + P   A P    AP     P  PV P   S P
Sbjct: 635 PQPPAAPVVPEVPSVPQRPAVPVVPEAPSVPQPPAAPVVPEVPSVP 680



 Score = 30.7 bits (66), Expect = 0.12
 Identities = 15/46 (32%), Positives = 16/46 (34%)
 Frame = -3

Query: 375 PHPQVGPHAPEMETEPTAQAGPANSTAPMTGTCPVTPVEPATGSSP 238
           P P V P  PE  + P     P     P     P  PV P   S P
Sbjct: 590 PQPPVAPVVPEAPSVPQPPVAPVAPEVPSVPQRPAVPVVPEAPSVP 635


>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 422

 Score = 31.1 bits (67), Expect = 0.089
 Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
 Frame = -3

Query: 369 PQVGPHAPEMETEPTAQAGPANSTAPMTGTCPVTPVE--PATGS-SPA 235
           P  G HA    + P+A  G +  + P + T P++P    P T + +PA
Sbjct: 273 PMYGSHAAPYASTPSAAVGSSRGSTPASATVPISPARGFPTTSAYNPA 320


>SPAC4D7.05 |sum1|tif34|translation initiation factor
           eIF3i|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 328

 Score = 29.1 bits (62), Expect = 0.36
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = -2

Query: 292 DDGHLSRYTGGACHGEFASHGHVTDAGAAVPSTAAVPDRT 173
           +DG +SRY   A  GEF     V ++G+ +      PDRT
Sbjct: 167 EDGSVSRYD--AITGEFVESKQVHNSGSTITDLQFYPDRT 204


>SPBC106.11c |plg7||phospholipase A2 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 438

 Score = 27.1 bits (57), Expect = 1.4
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = +2

Query: 2   VTKVDL*KQPNMSKLVVFLFCIQVCFIQNVYSQCLGRV 115
           V K +L   PN  KL VF+F   +   +NVYS   G +
Sbjct: 102 VYKGELFHPPNNGKLPVFIFSHGLVGSRNVYSSLCGTI 139


>SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 358

 Score = 26.6 bits (56), Expect = 1.9
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = -3

Query: 348 PEMETEPTAQAGPANSTAPMTGTCPVTPVEPATGSSPATATL 223
           P   + PT+ +  +NST P T   P T   P + S  + +T+
Sbjct: 98  PITASVPTSSSILSNSTIPTTSPVPTTSSTPTSSSILSNSTI 139


>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1465

 Score = 25.4 bits (53), Expect = 4.4
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +2

Query: 47  VVFLFCIQVCFIQNVYSQCLGRV 115
           ++ LFC  VCFI  VY     RV
Sbjct: 133 LITLFCSLVCFISEVYVPPCNRV 155


>SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 466

 Score = 25.4 bits (53), Expect = 4.4
 Identities = 15/49 (30%), Positives = 21/49 (42%), Gaps = 3/49 (6%)
 Frame = -3

Query: 372 HPQVGPHAPEMETEPTAQAGPANSTAPMTGTC---PVTPVEPATGSSPA 235
           +PQ     P +  +P A A      AP+       PV P  PA  ++PA
Sbjct: 360 YPQAAFPPPPVMPQPAAAAVTTPVAAPVAAAAAAVPVPPPAPAPAAAPA 408


>SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA
           reductase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1053

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -2

Query: 262 GACHGEFASHGHVTDAGAAVPSTAAVP 182
           GACH  F   G+ T +  A+PS  A P
Sbjct: 126 GACHFFFKEVGNWTVSSIALPSNLANP 152


>SPBC16G5.15c |fkh2||fork head transcription factor Fkh2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 642

 Score = 24.6 bits (51), Expect = 7.7
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = -3

Query: 357 PHAPEMETEPTAQAGPANSTAPMTGTCPVTPVEPATGSSPATA 229
           P  P+M+      A PA+ST       P TP +  + S+  T+
Sbjct: 340 PILPKMKDTSIPAAEPASSTTSARDQTPSTPKDVGSPSTAETS 382


>SPAC21E11.06 |tif224||translation initiation factor eIF2B delta
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 467

 Score = 24.6 bits (51), Expect = 7.7
 Identities = 10/37 (27%), Positives = 17/37 (45%)
 Frame = -3

Query: 339 ETEPTAQAGPANSTAPMTGTCPVTPVEPATGSSPATA 229
           +  P +++     T+P T +  V+P EP      A A
Sbjct: 14  DQSPVSESSSVGGTSPATASSVVSPNEPKLSGKEAKA 50


>SPBC30B4.04c |sol1||SWI/SNF complex subunit
           Sol1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 865

 Score = 24.6 bits (51), Expect = 7.7
 Identities = 14/41 (34%), Positives = 18/41 (43%), Gaps = 4/41 (9%)
 Frame = -3

Query: 357 PHAPEMETEPTAQ----AGPANSTAPMTGTCPVTPVEPATG 247
           P AP   T PT Q    A P +S  P+       P++P  G
Sbjct: 359 PSAPTRPTPPTVQTSSSAAPVDSAEPVAYQPIKKPIDPMLG 399


>SPAC1F8.05 |isp3|meu4|sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 182

 Score = 24.6 bits (51), Expect = 7.7
 Identities = 11/33 (33%), Positives = 15/33 (45%)
 Frame = -3

Query: 333 EPTAQAGPANSTAPMTGTCPVTPVEPATGSSPA 235
           +P     PA + A  T     TP  PA  ++PA
Sbjct: 146 DPLTGITPAVAAAAATPAAAATPATPAAAATPA 178


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,716,698
Number of Sequences: 5004
Number of extensions: 29334
Number of successful extensions: 127
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 180421690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)