Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10a11
         (470 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             26   0.23 
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       25   0.54 
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    23   1.2  
DQ435328-1|ABD92643.1|  143|Apis mellifera OBP11 protein.              23   1.6  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   5.0  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               21   8.8  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   8.8  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   8.8  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   8.8  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 25.8 bits (54), Expect = 0.23
 Identities = 17/51 (33%), Positives = 20/51 (39%)
 Frame = -3

Query: 384 GEPPHPQVGPHAPEMETEPTAQAGPANSTAPMTGTCPVTPVEPATGSSPAT 232
           GE      G    E +   T  + PA  T   TG     P   ATG+ PAT
Sbjct: 192 GEDEFANGGAARDESKAGSTDASTPATVTT--TGATTTLPAASATGTGPAT 240


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 24.6 bits (51), Expect = 0.54
 Identities = 10/31 (32%), Positives = 12/31 (38%)
 Frame = -3

Query: 384 GEPPHPQVGPHAPEMETEPTAQAGPANSTAP 292
           G  P P   P AP+  + P    GP     P
Sbjct: 22  GPQPSPHQSPQAPQRGSPPNPSQGPPPGGPP 52



 Score = 21.0 bits (42), Expect = 6.7
 Identities = 10/34 (29%), Positives = 14/34 (41%)
 Frame = -3

Query: 384 GEPPHPQVGPHAPEMETEPTAQAGPANSTAPMTG 283
           G PP+P  GP        P +Q       +P +G
Sbjct: 37  GSPPNPSQGPPPGGPPGAPPSQNPSQMMISPASG 70


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 23.4 bits (48), Expect = 1.2
 Identities = 10/37 (27%), Positives = 17/37 (45%)
 Frame = -3

Query: 354 HAPEMETEPTAQAGPANSTAPMTGTCPVTPVEPATGS 244
           H P +ET  +    P  ++AP + T    P + A  +
Sbjct: 501 HEPVVETNSSPSPNPRIASAPSSSTSSSPPAKGAAAA 537


>DQ435328-1|ABD92643.1|  143|Apis mellifera OBP11 protein.
          Length = 143

 Score = 23.0 bits (47), Expect = 1.6
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +2

Query: 413 IKCYFNHISKMLDVHNKK 466
           +KCYFN + +  +V +KK
Sbjct: 68  LKCYFNCVLEKFNVMDKK 85


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 5.0
 Identities = 6/7 (85%), Positives = 7/7 (100%)
 Frame = -1

Query: 281 PVPLHRW 261
           PVP+HRW
Sbjct: 240 PVPVHRW 246


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 20.6 bits (41), Expect = 8.8
 Identities = 8/24 (33%), Positives = 11/24 (45%)
 Frame = -3

Query: 369 PQVGPHAPEMETEPTAQAGPANST 298
           P+ GP  PE + E     G  + T
Sbjct: 204 PEKGPKVPEKKKEDEIDEGKESKT 227


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 20.6 bits (41), Expect = 8.8
 Identities = 9/34 (26%), Positives = 16/34 (47%)
 Frame = -3

Query: 357 PHAPEMETEPTAQAGPANSTAPMTGTCPVTPVEP 256
           P +  +   P+AQ  P N+ +      P+ P+ P
Sbjct: 759 PLSVSIPPPPSAQNVPQNTNSQAIPRIPILPMIP 792


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 20.6 bits (41), Expect = 8.8
 Identities = 6/7 (85%), Positives = 6/7 (85%)
 Frame = -3

Query: 372 HPQVGPH 352
           HPQ GPH
Sbjct: 357 HPQAGPH 363


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 20.6 bits (41), Expect = 8.8
 Identities = 6/7 (85%), Positives = 6/7 (85%)
 Frame = -3

Query: 372 HPQVGPH 352
           HPQ GPH
Sbjct: 357 HPQAGPH 363


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 119,872
Number of Sequences: 438
Number of extensions: 2413
Number of successful extensions: 10
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12682287
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)