Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10a10
         (704 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   4.6  
SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyc...    25   8.0  

>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 14/34 (41%), Positives = 23/34 (67%)
 Frame = -1

Query: 575 SENASSSNPDAAISV*TSGPRANSSSKFSSIVPS 474
           S ++SSS+  +++S  +S   A+SSS  SSI+ S
Sbjct: 242 STSSSSSSTSSSLSSSSSSSTASSSSSSSSIISS 275


>SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 682

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 14/46 (30%), Positives = 21/46 (45%)
 Frame = +1

Query: 259 EHQPKLNPVRAFQVLHGCNGETEENYTSLSEYHDYEPSLEFDDSEL 396
           + Q   NP      L G NGE E  +TS  +  +   S E D++ +
Sbjct: 430 DFQANSNPFEDDDKLEGANGEMEVTFTSGFDVDNNANSSEKDETTI 475


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,682,440
Number of Sequences: 5004
Number of extensions: 52079
Number of successful extensions: 132
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)