Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10a10
         (704 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0088 + 26305326-26306372                                         31   0.67 
11_01_0692 - 5700394-5700474,5700546-5702675,5705033-5706169,570...    30   2.1  
02_05_0330 - 27996080-27996757,27996836-27997366,27998124-27998303     28   8.3  

>01_06_0088 + 26305326-26306372
          Length = 348

 Score = 31.5 bits (68), Expect = 0.67
 Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = -2

Query: 583 CSNRRMLLRLIQTPQSQCK-PRVPGPIPLQNSLR*CRRWLFYLKVL 449
           C++  + LRL Q P +  + P  P P PL + LR C R  F+L  L
Sbjct: 96  CASLPIKLRLSQQPPAAKRSPSSPPPPPLADFLRPCARSFFFLSCL 141


>11_01_0692 - 5700394-5700474,5700546-5702675,5705033-5706169,
            5709679-5709975
          Length = 1214

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = +2

Query: 599  K*WAMMRSDGV*SSWQLAACHPATS 673
            K W ++RSDG+ SSW   A H +TS
Sbjct: 1076 KKWTIVRSDGIISSWAGNAPHTSTS 1100


>02_05_0330 - 27996080-27996757,27996836-27997366,27998124-27998303
          Length = 462

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 13/35 (37%), Positives = 23/35 (65%), Gaps = 2/35 (5%)
 Frame = -1

Query: 101 INKKIIKLKCKQLPTYLS--KNYVALLFPIPVVQE 3
           +NK ++K K K++PT  S  K Y+   F +P+++E
Sbjct: 52  LNKDLLKKKVKKIPTIFSSLKEYMG-SFTVPLIEE 85


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,968,923
Number of Sequences: 37544
Number of extensions: 314430
Number of successful extensions: 680
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 667
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 680
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1815633512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)