Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10a10
         (704 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g64110.2 68414.m07264 AAA-type ATPase family protein contains...    31   0.98 
At1g64110.1 68414.m07263 AAA-type ATPase family protein contains...    31   0.98 
At1g70740.1 68414.m08154 protein kinase family protein contains ...    27   9.2  
At1g60250.1 68414.m06785 zinc finger (B-box type) family protein...    27   9.2  
At1g05150.1 68414.m00518 calcium-binding EF hand family protein ...    27   9.2  

>At1g64110.2 68414.m07264 AAA-type ATPase family protein contains
           Pfam domain, PF00004: ATPase, AAA family
          Length = 829

 Score = 30.7 bits (66), Expect = 0.98
 Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
 Frame = +2

Query: 176 YAYEVTANCLISRNHNCIDLFDDSKWTRNINP---NLIRSGPFKFYMVVMGK 322
           Y  E T   L S  +  +  FD SK+TRN++P    ++ SGP + Y  ++ K
Sbjct: 72  YLSEQTRVLLTSAAYVHLKHFDASKYTRNLSPASRAILLSGPAELYQQMLAK 123


>At1g64110.1 68414.m07263 AAA-type ATPase family protein contains
           Pfam domain, PF00004: ATPase, AAA family
          Length = 824

 Score = 30.7 bits (66), Expect = 0.98
 Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
 Frame = +2

Query: 176 YAYEVTANCLISRNHNCIDLFDDSKWTRNINP---NLIRSGPFKFYMVVMGK 322
           Y  E T   L S  +  +  FD SK+TRN++P    ++ SGP + Y  ++ K
Sbjct: 67  YLSEQTRVLLTSAAYVHLKHFDASKYTRNLSPASRAILLSGPAELYQQMLAK 118


>At1g70740.1 68414.m08154 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 425

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +2

Query: 164 RDIVYAYEVTANCLISRNHNCIDLFDDSKWTRNI 265
           R ++Y +E   NC+I R+    ++  D KW   I
Sbjct: 170 RGLLYLHEDAPNCIIHRDIKAGNILLDEKWVPKI 203


>At1g60250.1 68414.m06785 zinc finger (B-box type) family protein
           contains similarity to zinc finger protein GI:3618320
           from [Oryza sativa]
          Length = 251

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 12/42 (28%), Positives = 19/42 (45%)
 Frame = -2

Query: 481 CRRWLFYLKVLLECLAAPVAMVLDQVHGSIQSHQIQGLVHSH 356
           C RW+F ++  L   +   A+V    H  I       ++HSH
Sbjct: 138 CERWMFAMRCELCVASNSNAVVYCPTHNQILCDSCDRMIHSH 179


>At1g05150.1 68414.m00518 calcium-binding EF hand family protein low
           similarity to O-linked GlcNAc transferase [Homo sapiens]
            GI:2266994; contains Pfam profiles PF00036: EF hand,
           PF00515: TPR Domain
          Length = 808

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 13/49 (26%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
 Frame = +2

Query: 137 WRITD---LLARRDIVYAYEVTANCLISRNHNCIDLFDDSKWTRNINPN 274
           W++ D   +L +R +    E         N+N +D F D+ W+R + P+
Sbjct: 146 WKLVDDLEILVKR-LKSKQEKDGKLKADNNNNNVDAFSDAGWSRELGPS 193


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,829,854
Number of Sequences: 28952
Number of extensions: 262439
Number of successful extensions: 523
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 513
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 522
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1516419560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)