Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10a09
         (799 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H1.09c |||vacuolar amino acid transporter |Schizosaccharomy...    29   1.0  
SPAC5D6.10c |mug116||sequence orphan|Schizosaccharomyces pombe|c...    29   1.0  
SPAC27E2.01 |||alpha-amylase homolog |Schizosaccharomyces pombe|...    28   1.8  
SPAC4G8.10 |gos1||SNARE Gos1|Schizosaccharomyces pombe|chr 1|||M...    27   2.4  
SPAC3H1.05 |||CAAX prenyl protease |Schizosaccharomyces pombe|ch...    27   3.1  
SPAC23D3.10c |eng2||endo-1,3-beta-glucanase Eng2|Schizosaccharom...    26   5.4  
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22...    25   9.5  
SPAC144.12 |||ribose 5-phosphate isomerase |Schizosaccharomyces ...    25   9.5  
SPBC2F12.03c |||EST1 family protein|Schizosaccharomyces pombe|ch...    25   9.5  
SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyc...    25   9.5  
SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|c...    25   9.5  

>SPAC3H1.09c |||vacuolar amino acid transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 656

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 20/79 (25%), Positives = 36/79 (45%), Gaps = 4/79 (5%)
 Frame = +1

Query: 247 YAACEQLLSIILERSTPEEALLVFIEQIE----LAKNDAQFSVSLTPLQQVLKKLSGKRG 414
           YAA    +  ++  + PE    V I+ +     L     Q   ++  ++Q +   SGKR 
Sbjct: 510 YAAFGSKVKTVVILNMPESTFTVIIQFLYAIAILLSTPLQLFPAIAIIEQGIFTRSGKRN 569

Query: 415 RSLEWCFNSIRTYIEGISI 471
           R ++W  N +R  I  ++I
Sbjct: 570 RKIKWRKNYLRVLIVILAI 588


>SPAC5D6.10c |mug116||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 135

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +2

Query: 512 IVFRILEGLQRYILCYHCFMIL 577
           IVF + + LQRY   +HCF +L
Sbjct: 9   IVFALYKFLQRYFHSFHCFFLL 30


>SPAC27E2.01 |||alpha-amylase homolog |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 491

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 10/20 (50%), Positives = 16/20 (80%)
 Frame = +2

Query: 251 QHVNNFYQSY*KDLLQKRHF 310
           Q V+NF+Q++ +DL+Q  HF
Sbjct: 196 QEVHNFFQNWIRDLIQTYHF 215


>SPAC4G8.10 |gos1||SNARE Gos1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 182

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 11/36 (30%), Positives = 23/36 (63%)
 Frame = +1

Query: 574 PFIDEIMKSSTDNTKAKEIVSVFLISLLGKPFIYFN 681
           PFI++I++ ++   +   I+   LIS+L   F++F+
Sbjct: 147 PFINQILRKTSIRRRRDSIILALLISVLMLLFLFFH 182


>SPAC3H1.05 |||CAAX prenyl protease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 474

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = +1

Query: 85  AIVSKLLDSEKYKEALSIPYDEEHIENFKENCWEIVSVIIKKIDG 219
           AI+++ +D +KY++ALS   D+             V ++I K DG
Sbjct: 81  AILAEHVDEKKYQKALSYARDKSWFSTIVSTFTLAVDLLIIKYDG 125


>SPAC23D3.10c |eng2||endo-1,3-beta-glucanase
           Eng2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 706

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 15/67 (22%), Positives = 31/67 (46%)
 Frame = +1

Query: 475 DLNLEEKECLLLDSIPNFRRITKIYSMLPLFYDPFIDEIMKSSTDNTKAKEIVSVFLISL 654
           D+N +      LDS+    +I  +Y+ + L     + +   ++T  TK K+ ++ F  + 
Sbjct: 364 DINFDVVNASNLDSMYTSGKIVAMYAQVCLVASRILGDSTLTNTGLTKLKQAMARFTTNT 423

Query: 655 LGKPFIY 675
              P +Y
Sbjct: 424 QMYPLVY 430


>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
            Snf22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1680

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 23/97 (23%), Positives = 41/97 (42%)
 Frame = +1

Query: 370  TPLQQVLKKLSGKRGRSLEWCFNSIRTYIEGISIPDLNLEEKECLLLDSIPNFRRITKIY 549
            TPLQ  L +L       L   FNSI+++ E  + P  N   ++ + L+       I +++
Sbjct: 1027 TPLQNNLPELWALLNFVLPKIFNSIKSFDEWFNTPFANTGGQDKIGLNEEEALLIIKRLH 1086

Query: 550  SMLPLFYDPFIDEIMKSSTDNTKAKEIVSVFLISLLG 660
             +L     PF+   +K   +     ++  V    L G
Sbjct: 1087 KVL----RPFLFRRLKKDVEKELPDKVEKVIKCPLSG 1119


>SPAC144.12 |||ribose 5-phosphate isomerase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 274

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 19/66 (28%), Positives = 30/66 (45%)
 Frame = +1

Query: 538 TKIYSMLPLFYDPFIDEIMKSSTDNTKAKEIVSVFLISLLGKPFIYFNVDPNLGAESEIR 717
           T +Y +  L   P +D ++   T     + IV+  L   LG P  Y NVD +     E+ 
Sbjct: 43  TVVYVVERLLTKPGVDSVVFIPTGFQSKQLIVNNGL--RLGDPDCYPNVDVSFDGADEVD 100

Query: 718 ENCKII 735
           +N + I
Sbjct: 101 DNLQCI 106


>SPBC2F12.03c |||EST1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 891

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = +1

Query: 91  VSKLLDSEKYKEALSIPYD-EEHIENFKENCWEIV 192
           VS  L  +KY EA ++    ++ + NFKENC  +V
Sbjct: 11  VSWKLCEQKYNEATTLLSKLKKLLGNFKENCTSVV 45


>SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 735

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = +1

Query: 40  CFGCDKNMNESVNIVAIVSKL-LDSEKYKEALSIPYDEEHIENFKE 174
           CF    N +  VNIV +V+ L   SE+  EA ++    E   NF+E
Sbjct: 345 CFQSSYNASFLVNIVGVVATLSSSSEENSEASNLSTLFEKSGNFEE 390


>SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 871

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 29/123 (23%), Positives = 55/123 (44%), Gaps = 1/123 (0%)
 Frame = +1

Query: 133 SIPYDEEHIENFKENCWEIVSVI-IKKIDGDTLTIKPSLYAACEQLLSIILERSTPEEAL 309
           S+  DEE +     N  E   V  +KK++   +  +  L    E  L+ ++ +S  +   
Sbjct: 194 SVLNDEETLHELFPNASEFTCVRDLKKLE-KKVKKRSDLGNKYESTLNSLINKSVKKHNK 252

Query: 310 LVFIEQIELAKNDAQFSVSLTPLQQVLKKLSGKRGRSLEWCFNSIRTYIEGISIPDLNLE 489
           LV   +   +  D    V   P  + LK L GK+  ++++C ++I    E +     +LE
Sbjct: 253 LVKKHKPLPSTLDYTAYVKKRPTHR-LKFLIGKKVDTIDYCRDTIAELDEVVDKLQTSLE 311

Query: 490 EKE 498
           E++
Sbjct: 312 ERK 314


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,149,663
Number of Sequences: 5004
Number of extensions: 65976
Number of successful extensions: 176
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)