Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov10a09
(799 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0027 - 250837-250877,250972-252909,253733-253805,254476-25... 30 1.9
01_01_1123 - 8902598-8903019,8903390-8903555,8903805-8903996,890... 29 4.3
03_01_0005 + 46370-46454,46962-47071,47381-47545,47672-48463,487... 29 5.7
09_04_0697 + 19566182-19566851,19567565-19567598,19567677-195677... 28 7.5
09_02_0449 - 9461385-9461431,9461487-9461628,9461733-9461831,946... 28 7.5
07_03_1684 - 28637242-28637805,28638490-28638684,28638786-28638992 28 7.5
08_02_0975 + 23205590-23205733,23206813-23206894,23207017-232071... 28 9.9
03_04_0231 + 19050105-19050567,19051376-19052648,19052743-19054171 28 9.9
>03_01_0027 -
250837-250877,250972-252909,253733-253805,254476-254555,
255336-255595,255721-255785,256747-256839
Length = 849
Score = 30.3 bits (65), Expect = 1.9
Identities = 24/89 (26%), Positives = 42/89 (47%), Gaps = 1/89 (1%)
Frame = +1
Query: 46 GCDKNMNESVNIVAIVSKLL-DSEKYKEALSIPYDEEHIENFKENCWEIVSVIIKKIDGD 222
GCD NE VN+ +S+LL +S K+ + E N EN +++ + K++ D
Sbjct: 413 GCDAISNEMVNLQQEISRLLAESNSMKQQI---LSESERANKAENEIQVLKDTVLKLNSD 469
Query: 223 TLTIKPSLYAACEQLLSIILERSTPEEAL 309
T + E+L ++ E S ++ L
Sbjct: 470 KDTSLLQYNQSTERLSTLESELSKAQDDL 498
>01_01_1123 -
8902598-8903019,8903390-8903555,8903805-8903996,
8904125-8904388
Length = 347
Score = 29.1 bits (62), Expect = 4.3
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = +1
Query: 679 NVDPNLGAESEIRENCKIIVKDI 747
N++P G + EIR+NC+++ K I
Sbjct: 325 NINPLTGYDGEIRKNCRVVNKKI 347
>03_01_0005 + 46370-46454,46962-47071,47381-47545,47672-48463,
48730-48840,48935-49195,49415-49638,49735-49855,
50673-51214,51302-51488,51569-51895,52047-52197,
52287-52424,52918-53013,53276-53357,54411-54679,
54769-54882,55050-55288,55488-55715,55799-55951,
56479-56616,57061-57188,57598-57718,58142-58306,
59486-59633,59772-59898,60025-60118,60119-60268,
60577-60624,60712-60819,61040-61114,61225-61275,
61341-61487,61584-61714,61944-62031,62204-62266,
62336-62582,62830-62981,63056-63126,63214-63370,
63520-63687
Length = 2323
Score = 28.7 bits (61), Expect = 5.7
Identities = 40/169 (23%), Positives = 68/169 (40%), Gaps = 3/169 (1%)
Frame = +1
Query: 166 FKENCWEIV---SVIIKKIDGDTLTIKPSLYAACEQLLSIILERSTPEEALLVFIEQIEL 336
F E CWE++ S + + D+L E LL ++ + +F++ IE
Sbjct: 1495 FWEFCWEVIQHHSYATEWLCLDSLLSFSCCRGENESLLKMLYPLFSESTLRSIFVDIIES 1554
Query: 337 AKNDAQFSVSLTPLQQVLKKLSGKRGRSLEWCFNSIRTYIEGISIPDLNLEEKECLLLDS 516
+N + SV L L+ V L L + + GIS + K +L
Sbjct: 1555 LENAGENSV-LAILRCVRSVLG-----LLHFSMRTRNLSSLGISYEMMMQFVKSSWILHL 1608
Query: 517 IPNFRRITKIYSMLPLFYDPFIDEIMKSSTDNTKAKEIVSVFLISLLGK 663
N RR+ I ++L P I ++ +N K + F+ +LLG+
Sbjct: 1609 SCNKRRVAPIAALLSAVLHPAIFPNLEMHQENEKGPGPLKWFIENLLGE 1657
>09_04_0697 +
19566182-19566851,19567565-19567598,19567677-19567725,
19567891-19567949,19568063-19568079,19568178-19568329,
19568459-19568548,19568793-19568886,19568976-19569127,
19569630-19569727,19570049-19570184,19570695-19570793,
19570898-19571029
Length = 593
Score = 28.3 bits (60), Expect = 7.5
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = -3
Query: 155 CSSS*GILKASLYFSESNNLETIATIF 75
C + + A+ YFSE +NL IATIF
Sbjct: 26 CRAGCSLAIAAYYFSEGSNLTFIATIF 52
>09_02_0449 -
9461385-9461431,9461487-9461628,9461733-9461831,
9462052-9462100,9462179-9462212,9462880-9463055,
9463094-9463532,9463784-9463971,9463988-9464496
Length = 560
Score = 28.3 bits (60), Expect = 7.5
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = -3
Query: 155 CSSS*GILKASLYFSESNNLETIATIF 75
C + + A+ YFSE +NL IATIF
Sbjct: 258 CRAGCSLAIAAYYFSEGSNLTFIATIF 284
>07_03_1684 - 28637242-28637805,28638490-28638684,28638786-28638992
Length = 321
Score = 28.3 bits (60), Expect = 7.5
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +1
Query: 679 NVDPNLGAESEIRENCKII 735
N+ P G + EIRENC+++
Sbjct: 301 NISPLTGDDGEIRENCRVV 319
>08_02_0975 +
23205590-23205733,23206813-23206894,23207017-23207127,
23207212-23208006,23208338-23208704,23209219-23209300,
23209477-23209532,23209888-23209942
Length = 563
Score = 27.9 bits (59), Expect = 9.9
Identities = 18/52 (34%), Positives = 29/52 (55%)
Frame = +1
Query: 298 EEALLVFIEQIELAKNDAQFSVSLTPLQQVLKKLSGKRGRSLEWCFNSIRTY 453
EEA + E ++ AK +A +Q+++ KL KR SLE FN++R +
Sbjct: 504 EEAKMTAWENLQKAKAEAA-------IQKLVMKLEKKRSYSLERIFNTLRRH 548
>03_04_0231 + 19050105-19050567,19051376-19052648,19052743-19054171
Length = 1054
Score = 27.9 bits (59), Expect = 9.9
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = -3
Query: 284 SNMIDRSCSHAAYKEGLIVRVSPSIFFMITDTISQQFSLKFS 159
S ++ C + ++G+I V F +DT + QFSL+ S
Sbjct: 550 SKILKMGCERPSERKGIIKGVVKGAFHARSDTYADQFSLQVS 591
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,605,062
Number of Sequences: 37544
Number of extensions: 322439
Number of successful extensions: 760
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 743
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 760
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2162420256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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