Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10a09
         (799 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47730| Best HMM Match : Ion_trans (HMM E-Value=1e-14)               29   4.4  
SB_16700| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.8  
SB_5584| Best HMM Match : p450 (HMM E-Value=1)                         29   5.8  

>SB_47730| Best HMM Match : Ion_trans (HMM E-Value=1e-14)
          Length = 904

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
 Frame = -2

Query: 228 KSITINFLYDN*YYFPT---VFFEIFYMFFIIRYTQGFFILL 112
           KS  I  L ++   +PT   VFF +  MF +I +  GF+I++
Sbjct: 287 KSFRIKSLMESHTTYPTFLRVFFLLHLMFLLINWNAGFYIMI 328


>SB_16700| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 128

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 10/18 (55%), Positives = 16/18 (88%)
 Frame = +1

Query: 514 SIPNFRRITKIYSMLPLF 567
           SIP+ R ITK+Y++LP++
Sbjct: 85  SIPSIRSITKLYNVLPIY 102


>SB_5584| Best HMM Match : p450 (HMM E-Value=1)
          Length = 286

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +1

Query: 103 LDSEKYKEALSIPYDEEHIENFKE 174
           +DS +YK   +IP +E  ++N+KE
Sbjct: 1   MDSVRYKSTAAIPKEEAKVKNYKE 24


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,697,191
Number of Sequences: 59808
Number of extensions: 408371
Number of successful extensions: 1108
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1080
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1108
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2203769656
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)