Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10a09
         (799 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    24   1.4  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    22   5.7  
DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    22   7.6  

>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -2

Query: 78  IHRLVHVFVTSKALAQCLL*ITHIP 4
           +H   + FVTS A A CL+ +  +P
Sbjct: 76  LHTATNYFVTSLAFADCLVGLVVMP 100


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 9/23 (39%), Positives = 10/23 (43%)
 Frame = -2

Query: 192 YYFPTVFFEIFYMFFIIRYTQGF 124
           YYF T    I Y    I+Y   F
Sbjct: 317 YYFSTTINPILYNLMSIKYRNAF 339


>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = -3

Query: 332 SICSMNTKSASSGVDLSNMIDRSCSHAAYKE 240
           S CS+ T S++S    S   DRS    +  E
Sbjct: 174 SECSLGTASSTSSTASSRNSDRSAGSPSVSE 204


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 202,525
Number of Sequences: 438
Number of extensions: 4133
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25246416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)