Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10a09
         (799 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g58800.1 68416.m06553 expressed protein proline-rich protein ...    30   1.5  
At1g71800.1 68414.m08298 cleavage stimulation factor, putative s...    29   2.7  
At1g31290.1 68414.m03829 PAZ domain-containing protein / piwi do...    29   2.7  
At1g14750.1 68414.m01763 cyclin, putative (SDS) identical to cyc...    29   3.6  
At1g32440.1 68414.m04004 pyruvate kinase, putative similar to py...    29   4.7  
At5g56410.1 68418.m07041 F-box family protein contains F-box dom...    28   6.2  
At3g43682.1 68416.m04659 hypothetical protein                          28   6.2  
At1g28130.2 68414.m03447 auxin-responsive GH3 family protein sim...    28   6.2  
At1g28130.1 68414.m03446 auxin-responsive GH3 family protein sim...    28   6.2  
At5g14220.1 68418.m01661 protoporphyrinogen oxidase, putative si...    28   8.3  
At2g38380.1 68415.m04715 peroxidase 22 (PER22) (P22) (PRXEA) / b...    28   8.3  
At1g50480.1 68414.m05660 formate--tetrahydrofolate ligase / 10-f...    28   8.3  
At1g04570.1 68414.m00450 integral membrane transporter family pr...    28   8.3  

>At3g58800.1 68416.m06553 expressed protein proline-rich protein
           A41R, Chlorella virus PBCV-1, PIR:T17531
          Length = 344

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 28/81 (34%), Positives = 41/81 (50%), Gaps = 10/81 (12%)
 Frame = +1

Query: 442 IRTYIEGISIPDLNLEEKECLLLDSIPNF--RRITKIYS-----MLPLFYDP-FIDE--I 591
           IR ++EG+ +  ++  E ECL L   P+F   RI  + S     +  LF D  F+DE   
Sbjct: 226 IREFLEGLRMEGIDAAEIECLDLPISPDFLADRIPGLDSDVSAKLFKLFRDKGFVDEKGY 285

Query: 592 MKSSTDNTKAKEIVSVFLISL 654
           MK     T  K+ +S + ISL
Sbjct: 286 MKRDGRRTPWKQALSGYKISL 306


>At1g71800.1 68414.m08298 cleavage stimulation factor, putative
           similar to cleavage stimulation factor 64 kilodalton
           subunit GB:AAD47839 GI:5713194 from [Drosophila
           melanogaster], SP|P33240 Cleavage stimulation factor, 64
           kDa subunit {Homo sapiens}; contains InterPro entry
           IPR000504: RNA-binding region RNP-1 (RNA recognition
           motif) (RRM)
          Length = 461

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 16/43 (37%), Positives = 22/43 (51%)
 Frame = +1

Query: 133 SIPYDEEHIENFKENCWEIVSVIIKKIDGDTLTIKPSLYAACE 261
           +IPYD    E  +E C E+  V+  ++  D  T KP  Y  CE
Sbjct: 15  NIPYDATE-EQLREICGEVGPVVSFRLVTDRETGKPKGYGFCE 56


>At1g31290.1 68414.m03829 PAZ domain-containing protein / piwi
            domain-containing protein contains Pfam profiles PF02170:
            PAZ domain, PF02171: Piwi domain
          Length = 1194

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
 Frame = +1

Query: 64   NESVNIVAIVSKLLDSEKYKEALSIP---YDEEHIENFKENCWEIV 192
            N S +IVA+V  L   E  + A  +    + +E I+ F E CWE++
Sbjct: 934  NMSPSIVAVVGTLNWPEANRYAARVKAQSHRKEEIQGFGETCWELI 979


>At1g14750.1 68414.m01763 cyclin, putative (SDS) identical to
           cyclin-like protein [Arabidopsis thaliana] GI:20302467;
           low similarity to SP|P30278 G2/mitotic-specific cyclin 2
           (B-like cyclin) (CycMs2 {Medicago sativa}; contains Pfam
           profiles PF00134: Cyclin, N-terminal domain, PF02984:
           Cyclin, C-terminal domain
          Length = 578

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 16/43 (37%), Positives = 21/43 (48%)
 Frame = +1

Query: 46  GCDKNMNESVNIVAIVSKLLDSEKYKEALSIPYDEEHIENFKE 174
           G  K +   + IV  VS L  SEK+ E +S   D+E  E   E
Sbjct: 229 GSAKELKPELEIVGCVSDLACSEKFSEEVSDSLDDESSEQRSE 271


>At1g32440.1 68414.m04004 pyruvate kinase, putative similar to
           pyruvate kinase isozyme G, chloroplast precursor
           [Nicotiana tabacum] SWISS-PROT:Q40546
          Length = 571

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 11/35 (31%), Positives = 22/35 (62%)
 Frame = +1

Query: 157 IENFKENCWEIVSVIIKKIDGDTLTIKPSLYAACE 261
           ++N+ + C   +SVI+K    D++   PS+ +AC+
Sbjct: 298 LKNYLKTCSADISVIVKIESADSIKNLPSIISACD 332


>At5g56410.1 68418.m07041 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 503

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 30/132 (22%), Positives = 58/132 (43%), Gaps = 7/132 (5%)
 Frame = +1

Query: 145 DEEHIENFKENCWEIVSVIIKKIDGDTL----TIKPSLYAACEQLL-SIILERSTPEEAL 309
           DEE ++    NC+ +  +++++  GD +     I PSL +   ++L     E        
Sbjct: 184 DEESLQRLLSNCFVLEDLVVERRVGDNVRNFAVIIPSLLSLSFEILGQCSSEEYVIHTPS 243

Query: 310 LVFIEQIELAKNDAQFSVSLTPLQQVLKKLSGKRGRSLEWCFNSIRTYIEGIS--IPDLN 483
           L + +  +  +      +++  L++V    +G   + L     S+ TY++ +S  IPD N
Sbjct: 244 LKYFKARDFGECSTCLILNMPKLEEVFVSTAGHNIKKL---LESV-TYVKRLSLFIPDNN 299

Query: 484 LEEKECLLLDSI 519
            E    L  D I
Sbjct: 300 AEAFTALYGDVI 311


>At3g43682.1 68416.m04659 hypothetical protein
          Length = 150

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
 Frame = -3

Query: 338 ASSICSMNTKSASS---GVDLSNMIDRSCSHAAYKEGLIVRVS 219
           + SIC  ++ SASS   G +  N  +R+C    +KE + VR S
Sbjct: 13  SESICKPSSASASSSSKGCESQNSHNRNCFKGFFKERVFVRFS 55


>At1g28130.2 68414.m03447 auxin-responsive GH3 family protein
           similar to auxin-responsive GH3 product [Glycine max]
           GI:18591; contains Pfam profile PF03321: GH3
           auxin-responsive promoter
          Length = 466

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
 Frame = -3

Query: 440 ELK-HHSNDLPRFPDSFLSTCCNGVRE 363
           ELK  HSND P+  D  +  CC+ V +
Sbjct: 356 ELKPRHSNDPPKLDDKTMEDCCSEVED 382


>At1g28130.1 68414.m03446 auxin-responsive GH3 family protein
           similar to auxin-responsive GH3 product [Glycine max]
           GI:18591; contains Pfam profile PF03321: GH3
           auxin-responsive promoter
          Length = 609

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
 Frame = -3

Query: 440 ELK-HHSNDLPRFPDSFLSTCCNGVRE 363
           ELK  HSND P+  D  +  CC+ V +
Sbjct: 499 ELKPRHSNDPPKLDDKTMEDCCSEVED 525


>At5g14220.1 68418.m01661 protoporphyrinogen oxidase, putative
           similar to protoporphyrinogen IX oxidase, mitochondrial
           (PPO II) from Nicotiana tabacum [SP|O24164], Glycine
           max, AB025102, Spinacia oleracea [GI:14349153]; contains
           Pfam amine oxidase, flavin-containing domain [PF015930]
          Length = 508

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 14/53 (26%), Positives = 25/53 (47%)
 Frame = +1

Query: 550 SMLPLFYDPFIDEIMKSSTDNTKAKEIVSVFLISLLGKPFIYFNVDPNLGAES 708
           S   +  +PF+ +   S   +  A+E VS F     G+  + + +DP +G  S
Sbjct: 129 SKFQILLEPFLWKKKSSKVSDASAEESVSEFFQRHFGQEVVDYLIDPFVGGTS 181


>At2g38380.1 68415.m04715 peroxidase 22 (PER22) (P22) (PRXEA) /
           basic peroxidase E identical to SP|P24102 Peroxidase 22
           precursor (EC 1.11.1.7) (Atperox P22) (ATPEa) (Basic
           peroxidase E) {Arabidopsis thaliana}; identical to cDNA
           class III peroxidase ATPEa, GI:17530569
          Length = 349

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = +1

Query: 631 VSVFLISLLGKPFIYFNVDPNLGAESEIRENCKII 735
           +SVF  + +       N+ P  G + EIR+NC+++
Sbjct: 298 MSVFFRAFIDAMIRMGNLRPLTGTQGEIRQNCRVV 332


>At1g50480.1 68414.m05660 formate--tetrahydrofolate ligase /
           10-formyltetrahydrofolate synthetase (THFS) identical to
           10-formyltetrahydrofolate synthetase (Arabidopsis
           thaliana) GI:5921663
          Length = 634

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = -3

Query: 377 NGVRETENWASFFASSICSMNTKSASSGVDLSNMIDRSCSH 255
           N VR+    A  F + +CS +  S    VDL   ++++C +
Sbjct: 467 NAVRKFSMDAGAFDAVVCSHHAHSGKGAVDLGIAVEKACQN 507


>At1g04570.1 68414.m00450 integral membrane transporter family
           protein contains 8 transmembrane domains; contains Pfam
           PF03092: BT1 family; contains TIGRFAMS TIGR00788:
           folate/biopterin transporter; similar to hypothetical
           protein GB:AAD38263
          Length = 542

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 14/42 (33%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
 Frame = -3

Query: 347 SFFASSICSMNTKSASSGVDLSNMID-RSCSHAAYKEGLIVR 225
           SF AS++C     SA  GV L+N+I   S +++    G++++
Sbjct: 440 SFLASTLCLSQIVSAFLGVGLANLIGITSSNYSNLSSGILIQ 481


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,475,743
Number of Sequences: 28952
Number of extensions: 304733
Number of successful extensions: 800
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 774
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 799
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1804564000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)