Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov10a08
(632 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_21210| Best HMM Match : No HMM Matches (HMM E-Value=.) 201 4e-52
SB_7724| Best HMM Match : ATP-synt_ab_C (HMM E-Value=0) 57 1e-08
SB_55653| Best HMM Match : No HMM Matches (HMM E-Value=.) 49 3e-06
SB_26181| Best HMM Match : DUF963 (HMM E-Value=0.00098) 33 0.25
SB_55826| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.8
SB_55282| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.8
SB_11794| Best HMM Match : TNFR_c6 (HMM E-Value=1.4e-05) 30 1.8
SB_12284| Best HMM Match : ATP-synt_ab (HMM E-Value=0) 29 4.1
SB_31087| Best HMM Match : Ldl_recept_a (HMM E-Value=4.2e-32) 29 4.1
SB_39072| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.5
SB_44544| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.5
SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26) 28 5.5
SB_38162| Best HMM Match : zf-CCCH (HMM E-Value=0.018) 28 5.5
SB_9151| Best HMM Match : WAP (HMM E-Value=0.045) 28 5.5
SB_7649| Best HMM Match : PolyA_pol (HMM E-Value=6.4) 28 5.5
SB_53072| Best HMM Match : K_tetra (HMM E-Value=8.2e-31) 28 7.2
SB_41288| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.6
SB_20006| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.6
SB_58339| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.6
SB_33718| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.6
SB_20140| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.6
SB_4465| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.6
>SB_21210| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 428
Score = 201 bits (490), Expect = 4e-52
Identities = 96/110 (87%), Positives = 102/110 (92%)
Frame = +3
Query: 168 YKTVSGVNGPLVILDEVKFPKFSEIVQLKLADGTLRSGQVLEVSGSKAVVQVFEGTSGID 347
YKTVSGVNGPLVILD VKFPKF+EIV L L DG+ RSG+VLEVSGSKAVVQVFEGTSGID
Sbjct: 14 YKTVSGVNGPLVILDNVKFPKFAEIVTLTLQDGSQRSGEVLEVSGSKAVVQVFEGTSGID 73
Query: 348 AKNTLCEFTGDILRTPVSEDMLGRVFNGSGKPIDKGPPILAEDFLDIQGQ 497
AK+T CEFTGDILRTPVSEDMLGRVFNGSGK ID+GPP+LAEDFLDIQ Q
Sbjct: 74 AKHTTCEFTGDILRTPVSEDMLGRVFNGSGKAIDRGPPVLAEDFLDIQAQ 123
>SB_7724| Best HMM Match : ATP-synt_ab_C (HMM E-Value=0)
Length = 448
Score = 57.2 bits (132), Expect = 1e-08
Identities = 30/98 (30%), Positives = 51/98 (52%)
Frame = +3
Query: 327 EGTSGIDAKNTLCEFTGDILRTPVSEDMLGRVFNGSGKPIDKGPPILAEDFLDIQGQPIN 506
+GT G+ + C TG + PV + LGR+ N G+PID+ P+ + I +
Sbjct: 127 DGTEGL-IRGQKCVDTGGPITIPVGPETLGRIINVIGEPIDERGPVETDKRAAIHAEAPE 185
Query: 507 PWSRIYPEEMIQTGISAIDVMNSIARGQKIPIFSAAGL 620
+E+++TGI +D++ A+G KI +F AG+
Sbjct: 186 FVEMSTEQEILETGIKVVDLLAPYAKGGKIGLFGGAGV 223
>SB_55653| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 390
Score = 49.2 bits (112), Expect = 3e-06
Identities = 34/94 (36%), Positives = 50/94 (53%), Gaps = 1/94 (1%)
Frame = +3
Query: 315 VQVFEGTSGIDAKNTLCEFTGDILRTPVSEDMLGRVFNGSGKPID-KGPPILAEDFLDIQ 491
V VF G + + + + TG I+ PV E++LGRV + G PID KGP + ++
Sbjct: 12 VVVF-GNDRLIKEGDIVKRTGAIVDVPVGEELLGRVVDALGNPIDGKGPTGGTRARVGVK 70
Query: 492 GQPINPWSRIYPEEMIQTGISAIDVMNSIARGQK 593
I P R +E + TGI A+D + I RGQ+
Sbjct: 71 APGIIP--RTSVKEPMLTGIKAVDSLVPIGRGQR 102
>SB_26181| Best HMM Match : DUF963 (HMM E-Value=0.00098)
Length = 620
Score = 32.7 bits (71), Expect = 0.25
Identities = 20/64 (31%), Positives = 34/64 (53%)
Frame = -2
Query: 475 SSAKIGGPLSMGLPEPLNTRPNMSSETGVRRMSPVNSQSVFFASIPDVPSNTWTTALEPL 296
SS+ + P + P PL + ++S + + SP+ S S +S P + S + T+ PL
Sbjct: 181 SSSPLTSPSPLTSPSPLTSSSPLTSSSPLTSSSPLTSSSPLTSSSP-LTSPSPLTSSSPL 239
Query: 295 TSST 284
TSS+
Sbjct: 240 TSSS 243
Score = 31.1 bits (67), Expect = 0.78
Identities = 26/94 (27%), Positives = 43/94 (45%)
Frame = -2
Query: 451 LSMGLPEPLNTRPNMSSETGVRRMSPVNSQSVFFASIPDVPSNTWTTALEPLTSST*PER 272
+S P PL + ++S + + SP+ S S +S P + S++ T+ PLTSS+
Sbjct: 165 ISAYFPSPLTSSSPLTSSSPLTSPSPLTSPSPLTSSSP-LTSSSPLTSSSPLTSSSPLTS 223
Query: 271 RVPSASFSCTISENLGNLTSSKMTRGPFTPDTVL 170
P S S S + +S + P T + L
Sbjct: 224 SSPLTSPSPLTSSSPLTSSSPLTSSSPLTSSSPL 257
Score = 29.9 bits (64), Expect = 1.8
Identities = 19/64 (29%), Positives = 34/64 (53%)
Frame = -2
Query: 475 SSAKIGGPLSMGLPEPLNTRPNMSSETGVRRMSPVNSQSVFFASIPDVPSNTWTTALEPL 296
SS+ + + P PL + ++S + + SP+ S S +S P + S++ T+ PL
Sbjct: 175 SSSPLTSSSPLTSPSPLTSPSPLTSSSPLTSSSPLTSSSPLTSSSP-LTSSSPLTSPSPL 233
Query: 295 TSST 284
TSS+
Sbjct: 234 TSSS 237
>SB_55826| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1199
Score = 29.9 bits (64), Expect = 1.8
Identities = 13/44 (29%), Positives = 20/44 (45%)
Frame = +2
Query: 467 GRGLLGHPGSAHQPMVTYLPRGDDPNWYLRY*CDELYCPWSEDP 598
GRG+ G+ H P + D W RY +CP+ ++P
Sbjct: 38 GRGIGGYHQLCHDPSIPAKAVEPDEPWMCRYCSVGAFCPYLQNP 81
>SB_55282| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1565
Score = 29.9 bits (64), Expect = 1.8
Identities = 18/48 (37%), Positives = 27/48 (56%)
Frame = +3
Query: 366 EFTGDILRTPVSEDMLGRVFNGSGKPIDKGPPILAEDFLDIQGQPINP 509
E T D +R PV+ +L RV+NGS + D LAE+ ++G + P
Sbjct: 1111 EETRDEIRDPVTRQILDRVYNGSVEFADLWVSGLAEN--PVKGASVGP 1156
>SB_11794| Best HMM Match : TNFR_c6 (HMM E-Value=1.4e-05)
Length = 331
Score = 29.9 bits (64), Expect = 1.8
Identities = 16/58 (27%), Positives = 29/58 (50%)
Frame = +1
Query: 361 SASSRVTFFVHRSLKTCWVACSTVPANPSTRVPQSWPRTSWTSRVSPSTHGHVSTQRR 534
S + ++ F +H +L + + T ANP+++ P TS S +PS + +T R
Sbjct: 192 STTCKMGFQLHPNLNSVCIPIPTPTANPTSKPMPQLPPTSPPSTTTPSMPANHTTDNR 249
>SB_12284| Best HMM Match : ATP-synt_ab (HMM E-Value=0)
Length = 238
Score = 28.7 bits (61), Expect = 4.1
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +3
Query: 543 TGISAIDVMNSIARGQKIPIFSAAGL 620
TGI ID++ A+G KI +F AG+
Sbjct: 5 TGIKVIDLIEPYAKGGKIGLFGGAGV 30
>SB_31087| Best HMM Match : Ldl_recept_a (HMM E-Value=4.2e-32)
Length = 1039
Score = 28.7 bits (61), Expect = 4.1
Identities = 19/58 (32%), Positives = 31/58 (53%)
Frame = -2
Query: 478 KSSAKIGGPLSMGLPEPLNTRPNMSSETGVRRMSPVNSQSVFFASIPDVPSNTWTTAL 305
+S+++IGG + + PL+ S + + R P QSV S+PD+ +N T AL
Sbjct: 355 ESASRIGGCVLRTVSRPLSAPMPRRSISDLARELPTPRQSVRSVSLPDL-TNVETLAL 411
>SB_39072| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1011
Score = 28.3 bits (60), Expect = 5.5
Identities = 17/42 (40%), Positives = 22/42 (52%)
Frame = +1
Query: 400 LKTCWVACSTVPANPSTRVPQSWPRTSWTSRVSPSTHGHVST 525
L TC ++ + P+ PSTR S P T T +PST ST
Sbjct: 632 LCTCTLSTPSTPSTPSTRSTPSTPSTPSTPS-TPSTPSTPST 672
>SB_44544| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1480
Score = 28.3 bits (60), Expect = 5.5
Identities = 14/51 (27%), Positives = 25/51 (49%)
Frame = -2
Query: 463 IGGPLSMGLPEPLNTRPNMSSETGVRRMSPVNSQSVFFASIPDVPSNTWTT 311
I G +S + + T S T +R +++Q F +PD PS+ +T+
Sbjct: 563 ISGDISFAMCDKSITNNTKSFHTKIRTPVQLSNQGSFTRKLPDAPSDHFTS 613
>SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26)
Length = 541
Score = 28.3 bits (60), Expect = 5.5
Identities = 19/53 (35%), Positives = 26/53 (49%)
Frame = +3
Query: 138 RDFISQPRLTYKTVSGVNGPLVILDEVKFPKFSEIVQLKLADGTLRSGQVLEV 296
RDF SQPRL VN P +D++K + + G L+ GQ +EV
Sbjct: 184 RDFTSQPRLIVIRSFDVNKPGCEVDDLK----GGVAGGSILKGVLKIGQEIEV 232
>SB_38162| Best HMM Match : zf-CCCH (HMM E-Value=0.018)
Length = 541
Score = 28.3 bits (60), Expect = 5.5
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = +1
Query: 433 PANPSTRVPQSWPRTSWTSRVSPSTH 510
P + TR P+S PR + TS+ +PS+H
Sbjct: 93 PVSVPTRSPKSPPREAKTSKKTPSSH 118
>SB_9151| Best HMM Match : WAP (HMM E-Value=0.045)
Length = 1865
Score = 28.3 bits (60), Expect = 5.5
Identities = 12/34 (35%), Positives = 16/34 (47%)
Frame = +1
Query: 391 HRSLKTCWVACSTVPANPSTRVPQSWPRTSWTSR 492
H +TC+ +P NP S +SWTSR
Sbjct: 148 HEGQRTCFATKQFLPGNPCQWCDPSVSTSSWTSR 181
>SB_7649| Best HMM Match : PolyA_pol (HMM E-Value=6.4)
Length = 318
Score = 28.3 bits (60), Expect = 5.5
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = -1
Query: 455 TLVDGFAGTVEHATQHVFRDRCTKNVTRELAEC 357
T+VD G V+ VF T+N+TR+L C
Sbjct: 182 TVVDTLEGFVDPFDLDVFSPHITRNLTRQLQRC 214
>SB_53072| Best HMM Match : K_tetra (HMM E-Value=8.2e-31)
Length = 414
Score = 27.9 bits (59), Expect = 7.2
Identities = 18/65 (27%), Positives = 35/65 (53%), Gaps = 4/65 (6%)
Frame = +3
Query: 96 SHAQATKEHVLAVSRDFISQPRLTYKTVSGV---NGPLVILDEVKFPKFSEIVQ-LKLAD 263
SH++ K + + + ++ RL ++++ NG L++ DEV F F+E V+ +L +
Sbjct: 31 SHSKRQKHYNDTLQEFYFNRHRLAFESILFYYQSNGRLILPDEVPFRVFTEEVEFFELGE 90
Query: 264 GTLRS 278
L S
Sbjct: 91 DALNS 95
>SB_41288| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 133
Score = 27.5 bits (58), Expect = 9.6
Identities = 12/38 (31%), Positives = 17/38 (44%)
Frame = +2
Query: 413 GSRVQRFRQTHRQGSPNLGRGLLGHPGSAHQPMVTYLP 526
G + Q ++ R S RGL+ PG +H Y P
Sbjct: 20 GKQKQELNRSDRDESSQTTRGLVEEPGPSHSRSADYTP 57
>SB_20006| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 608
Score = 27.5 bits (58), Expect = 9.6
Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Frame = +3
Query: 324 FEGTSGIDAKNTLCEFTGDILRTPVSEDMLGRVFNGSGKPIDKGPPILAEDFLDIQGQPI 503
F+ T + +K LC+FT +L +S+ + G K I KG +L L++Q P
Sbjct: 367 FKNTKDVKSKENLCKFTLPLL-IGLSQAL------GVSK-ICKGNEVLISQVLNLQFSPS 418
Query: 504 NPWSR-IYPEEMIQ 542
P SR + P +++
Sbjct: 419 KPGSRPMLPRPLVR 432
>SB_58339| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 356
Score = 27.5 bits (58), Expect = 9.6
Identities = 12/38 (31%), Positives = 17/38 (44%)
Frame = +2
Query: 413 GSRVQRFRQTHRQGSPNLGRGLLGHPGSAHQPMVTYLP 526
G + Q ++ R S RGL+ PG +H Y P
Sbjct: 20 GKQKQELNRSDRDESSQTTRGLVEEPGPSHSRSADYTP 57
>SB_33718| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 586
Score = 27.5 bits (58), Expect = 9.6
Identities = 12/38 (31%), Positives = 17/38 (44%)
Frame = +2
Query: 413 GSRVQRFRQTHRQGSPNLGRGLLGHPGSAHQPMVTYLP 526
G + Q ++ R S RGL+ PG +H Y P
Sbjct: 20 GKQKQELNRSDRDESSQTTRGLVEEPGPSHSRSADYTP 57
>SB_20140| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 433
Score = 27.5 bits (58), Expect = 9.6
Identities = 12/38 (31%), Positives = 17/38 (44%)
Frame = +2
Query: 413 GSRVQRFRQTHRQGSPNLGRGLLGHPGSAHQPMVTYLP 526
G + Q ++ R S RGL+ PG +H Y P
Sbjct: 20 GKQKQELNRSDRDESSQTTRGLVEEPGPSHSRSADYTP 57
>SB_4465| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 133
Score = 27.5 bits (58), Expect = 9.6
Identities = 12/38 (31%), Positives = 17/38 (44%)
Frame = +2
Query: 413 GSRVQRFRQTHRQGSPNLGRGLLGHPGSAHQPMVTYLP 526
G + Q ++ R S RGL+ PG +H Y P
Sbjct: 20 GKQKQELNRSDRDESSQTTRGLVEEPGPSHSRSADYTP 57
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,112,876
Number of Sequences: 59808
Number of extensions: 535707
Number of successful extensions: 1475
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1352
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1472
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1584657875
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -