Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov10a08
(632 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g38510.2 68417.m05447 vacuolar ATP synthase subunit B, putati... 249 1e-66
At4g38510.1 68417.m05446 vacuolar ATP synthase subunit B, putati... 249 1e-66
At1g76030.1 68414.m08827 vacuolar ATP synthase subunit B / V-ATP... 248 2e-66
At1g20260.2 68414.m02530 vacuolar ATP synthase subunit B, putati... 248 2e-66
At1g20260.1 68414.m02529 vacuolar ATP synthase subunit B, putati... 248 2e-66
At5g08690.1 68418.m01034 ATP synthase beta chain 2, mitochondria... 53 1e-07
At5g08680.1 68418.m01033 ATP synthase beta chain, mitochondrial,... 53 1e-07
At5g08670.1 68418.m01032 ATP synthase beta chain 1, mitochondria... 53 1e-07
At2g07698.1 68415.m00949 ATP synthase alpha chain, mitochondrial... 49 3e-06
At1g78900.1 68414.m09198 vacuolar ATP synthase catalytic subunit... 43 2e-04
At5g52300.1 68418.m06491 low-temperature-responsive 65 kD protei... 30 1.5
At1g49190.1 68414.m05515 two-component responsive regulator fami... 29 1.9
At5g40000.1 68418.m04851 AAA-type ATPase family protein BCS1 nuc... 29 2.6
At1g52310.1 68414.m05902 protein kinase family protein / C-type ... 29 3.4
At5g21160.1 68418.m02528 La domain-containing protein / proline-... 28 4.5
At3g33530.1 68416.m04290 transducin family protein / WD-40 repea... 28 5.9
At1g44910.1 68414.m05146 FF domain-containing protein / WW domai... 28 5.9
At3g10650.1 68416.m01281 expressed protein 27 7.8
>At4g38510.2 68417.m05447 vacuolar ATP synthase subunit B, putative
/ V-ATPase B subunit, putative / vacuolar proton pump B
subunit, putative / V-ATPase 57 kDa subunit, putative
very strong similarity to SP|P11574 Vacuolar ATP
synthase subunit B (EC 3.6.3.14) (V-ATPase B subunit)
(Vacuolar proton pump B subunit) (V-ATPase 57 kDa
subunit) {Arabidopsis thaliana}; contains Pfam profiles
PF00006: ATP synthase alpha/beta family
nucleotide-binding domain, PF00306: ATP synthase ab C
terminal, PF02874: ATP synthase alpha/beta family
beta-barrel domain
Length = 487
Score = 249 bits (609), Expect = 1e-66
Identities = 118/157 (75%), Positives = 132/157 (84%)
Frame = +3
Query: 162 LTYKTVSGVNGPLVILDEVKFPKFSEIVQLKLADGTLRSGQVLEVSGSKAVVQVFEGTSG 341
+ Y+TVSGV GPLVIL++VK PK+ EIV ++L DGT R GQVLEV G KAVVQVFEGTSG
Sbjct: 18 MEYRTVSGVAGPLVILEKVKGPKYQEIVNIRLGDGTTRRGQVLEVDGEKAVVQVFEGTSG 77
Query: 342 IDAKNTLCEFTGDILRTPVSEDMLGRVFNGSGKPIDKGPPILAEDFLDIQGQPINPWSRI 521
ID K T +FTG++L+TPVS DMLGR+FNGSGKPID GPPIL E +LDI G INP R
Sbjct: 78 IDNKYTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERT 137
Query: 522 YPEEMIQTGISAIDVMNSIARGQKIPIFSAAGLPHNE 632
YPEEMIQTGIS IDVMNSIARGQKIP+FSAAGLPHNE
Sbjct: 138 YPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNE 174
>At4g38510.1 68417.m05446 vacuolar ATP synthase subunit B, putative
/ V-ATPase B subunit, putative / vacuolar proton pump B
subunit, putative / V-ATPase 57 kDa subunit, putative
very strong similarity to SP|P11574 Vacuolar ATP
synthase subunit B (EC 3.6.3.14) (V-ATPase B subunit)
(Vacuolar proton pump B subunit) (V-ATPase 57 kDa
subunit) {Arabidopsis thaliana}; contains Pfam profiles
PF00006: ATP synthase alpha/beta family
nucleotide-binding domain, PF00306: ATP synthase ab C
terminal, PF02874: ATP synthase alpha/beta family
beta-barrel domain
Length = 487
Score = 249 bits (609), Expect = 1e-66
Identities = 118/157 (75%), Positives = 132/157 (84%)
Frame = +3
Query: 162 LTYKTVSGVNGPLVILDEVKFPKFSEIVQLKLADGTLRSGQVLEVSGSKAVVQVFEGTSG 341
+ Y+TVSGV GPLVIL++VK PK+ EIV ++L DGT R GQVLEV G KAVVQVFEGTSG
Sbjct: 18 MEYRTVSGVAGPLVILEKVKGPKYQEIVNIRLGDGTTRRGQVLEVDGEKAVVQVFEGTSG 77
Query: 342 IDAKNTLCEFTGDILRTPVSEDMLGRVFNGSGKPIDKGPPILAEDFLDIQGQPINPWSRI 521
ID K T +FTG++L+TPVS DMLGR+FNGSGKPID GPPIL E +LDI G INP R
Sbjct: 78 IDNKYTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERT 137
Query: 522 YPEEMIQTGISAIDVMNSIARGQKIPIFSAAGLPHNE 632
YPEEMIQTGIS IDVMNSIARGQKIP+FSAAGLPHNE
Sbjct: 138 YPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNE 174
>At1g76030.1 68414.m08827 vacuolar ATP synthase subunit B / V-ATPase
B subunit / vacuolar proton pump B subunit / V-ATPase 57
kDa subunit identical to SP|P11574 Vacuolar ATP synthase
subunit B (EC 3.6.3.14) (V-ATPase B subunit) (Vacuolar
proton pump B subunit) (V-ATPase 57 kDa subunit)
{Arabidopsis thaliana}
Length = 486
Score = 248 bits (608), Expect = 2e-66
Identities = 118/157 (75%), Positives = 132/157 (84%)
Frame = +3
Query: 162 LTYKTVSGVNGPLVILDEVKFPKFSEIVQLKLADGTLRSGQVLEVSGSKAVVQVFEGTSG 341
+ Y+TVSGV GPLVILD+VK PK+ EIV ++L DG+ R GQVLEV G KAVVQVFEGTSG
Sbjct: 17 MEYRTVSGVAGPLVILDKVKGPKYQEIVNIRLGDGSTRRGQVLEVDGEKAVVQVFEGTSG 76
Query: 342 IDAKNTLCEFTGDILRTPVSEDMLGRVFNGSGKPIDKGPPILAEDFLDIQGQPINPWSRI 521
ID K T +FTG++L+TPVS DMLGR+FNGSGKPID GPPIL E +LDI G INP R
Sbjct: 77 IDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERT 136
Query: 522 YPEEMIQTGISAIDVMNSIARGQKIPIFSAAGLPHNE 632
YPEEMIQTGIS IDVMNSIARGQKIP+FSAAGLPHNE
Sbjct: 137 YPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNE 173
>At1g20260.2 68414.m02530 vacuolar ATP synthase subunit B, putative
/ V-ATPase B subunit, putative / vacuolar proton pump B
subunit, putative / V-ATPase 57 kDa subunit, putative
strong similarity to SP|P11574 Vacuolar ATP synthase
subunit B (EC 3.6.3.14) (V-ATPase B subunit) (Vacuolar
proton pump B subunit) (V-ATPase 57 kDa subunit)
{Arabidopsis thaliana}; contains Pfam profiles PF00006:
ATP synthase alpha/beta family nucleotide-binding
domain, PF02874: ATP synthase alpha/beta family
beta-barrel domain
Length = 485
Score = 248 bits (608), Expect = 2e-66
Identities = 118/157 (75%), Positives = 132/157 (84%)
Frame = +3
Query: 162 LTYKTVSGVNGPLVILDEVKFPKFSEIVQLKLADGTLRSGQVLEVSGSKAVVQVFEGTSG 341
+ Y+TVSGV GPLVILD+VK PK+ EIV ++L DG+ R GQVLEV G KAVVQVFEGTSG
Sbjct: 17 MEYRTVSGVAGPLVILDKVKGPKYQEIVNIRLGDGSTRRGQVLEVDGEKAVVQVFEGTSG 76
Query: 342 IDAKNTLCEFTGDILRTPVSEDMLGRVFNGSGKPIDKGPPILAEDFLDIQGQPINPWSRI 521
ID K T +FTG++L+TPVS DMLGR+FNGSGKPID GPPIL E +LDI G INP R
Sbjct: 77 IDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERT 136
Query: 522 YPEEMIQTGISAIDVMNSIARGQKIPIFSAAGLPHNE 632
YPEEMIQTGIS IDVMNSIARGQKIP+FSAAGLPHNE
Sbjct: 137 YPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNE 173
>At1g20260.1 68414.m02529 vacuolar ATP synthase subunit B, putative
/ V-ATPase B subunit, putative / vacuolar proton pump B
subunit, putative / V-ATPase 57 kDa subunit, putative
strong similarity to SP|P11574 Vacuolar ATP synthase
subunit B (EC 3.6.3.14) (V-ATPase B subunit) (Vacuolar
proton pump B subunit) (V-ATPase 57 kDa subunit)
{Arabidopsis thaliana}; contains Pfam profiles PF00006:
ATP synthase alpha/beta family nucleotide-binding
domain, PF02874: ATP synthase alpha/beta family
beta-barrel domain
Length = 330
Score = 248 bits (608), Expect = 2e-66
Identities = 118/157 (75%), Positives = 132/157 (84%)
Frame = +3
Query: 162 LTYKTVSGVNGPLVILDEVKFPKFSEIVQLKLADGTLRSGQVLEVSGSKAVVQVFEGTSG 341
+ Y+TVSGV GPLVILD+VK PK+ EIV ++L DG+ R GQVLEV G KAVVQVFEGTSG
Sbjct: 17 MEYRTVSGVAGPLVILDKVKGPKYQEIVNIRLGDGSTRRGQVLEVDGEKAVVQVFEGTSG 76
Query: 342 IDAKNTLCEFTGDILRTPVSEDMLGRVFNGSGKPIDKGPPILAEDFLDIQGQPINPWSRI 521
ID K T +FTG++L+TPVS DMLGR+FNGSGKPID GPPIL E +LDI G INP R
Sbjct: 77 IDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERT 136
Query: 522 YPEEMIQTGISAIDVMNSIARGQKIPIFSAAGLPHNE 632
YPEEMIQTGIS IDVMNSIARGQKIP+FSAAGLPHNE
Sbjct: 137 YPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNE 173
>At5g08690.1 68418.m01034 ATP synthase beta chain 2, mitochondrial
identical to SP|P83484 ATP synthase beta chain 2,
mitochondrial precursor (EC 3.6.3.14) {Arabidopsis
thaliana}; strong similarity to SP|P17614 ATP synthase
beta chain, mitochondrial precursor (EC 3.6.3.14)
{Nicotiana plumbaginifolia}; contains Pfam profiles
PF00006: ATP synthase alpha/beta family
nucleotide-binding domain, PF00306: ATP synthase ab C
terminal, PF02874: ATP synthase alpha/beta family
beta-barrel domain; supporting cDNA
gi|26452187|dbj|AK118582.1|
Length = 556
Score = 53.2 bits (122), Expect = 1e-07
Identities = 38/116 (32%), Positives = 55/116 (47%), Gaps = 4/116 (3%)
Frame = +3
Query: 285 VLEVS---GSKAVVQV-FEGTSGIDAKNTLCEFTGDILRTPVSEDMLGRVFNGSGKPIDK 452
VLEVS G V + +GT G+ + TG + PV LGR+ N G+PID+
Sbjct: 121 VLEVSHHLGQNVVRTIAMDGTEGLVRGRKVLN-TGAPITVPVGRATLGRIMNVLGEPIDE 179
Query: 453 GPPILAEDFLDIQGQPINPWSRIYPEEMIQTGISAIDVMNSIARGQKIPIFSAAGL 620
I E +L I +E++ TGI +D++ RG KI +F AG+
Sbjct: 180 RGEIKTEHYLPIHRDAPALVDLATGQEILATGIKVVDLLAPYQRGGKIGLFGGAGV 235
>At5g08680.1 68418.m01033 ATP synthase beta chain, mitochondrial,
putative strong similarity to SP|P83483 ATP synthase
beta chain 1, mitochondrial precursor (EC 3.6.3.14)
{Arabidopsis thaliana}, SP|P17614 ATP synthase beta
chain, mitochondrial precursor (EC 3.6.3.14) {Nicotiana
plumbaginifolia}; contains Pfam profiles PF00006: ATP
synthase alpha/beta family nucleotide-binding domain,
PF00306: ATP synthase ab C terminal, PF02874: ATP
synthase alpha/beta family beta-barrel domain
Length = 559
Score = 53.2 bits (122), Expect = 1e-07
Identities = 38/116 (32%), Positives = 55/116 (47%), Gaps = 4/116 (3%)
Frame = +3
Query: 285 VLEVS---GSKAVVQV-FEGTSGIDAKNTLCEFTGDILRTPVSEDMLGRVFNGSGKPIDK 452
VLEVS G V + +GT G+ + TG + PV LGR+ N G+PID+
Sbjct: 124 VLEVSHHLGQNVVRTIAMDGTEGLVRGRKVLN-TGAPITVPVGRATLGRIMNVLGEPIDE 182
Query: 453 GPPILAEDFLDIQGQPINPWSRIYPEEMIQTGISAIDVMNSIARGQKIPIFSAAGL 620
I E +L I +E++ TGI +D++ RG KI +F AG+
Sbjct: 183 RGEIKTEHYLPIHRDAPALVDLATGQEILATGIKVVDLLAPYQRGGKIGLFGGAGV 238
>At5g08670.1 68418.m01032 ATP synthase beta chain 1, mitochondrial
identical to SP|P83483 ATP synthase beta chain 1,
mitochondrial precursor (EC 3.6.3.14) {Arabidopsis
thaliana}; strong similarity to SP|P17614 ATP synthase
beta chain, mitochondrial precursor (EC 3.6.3.14)
{Nicotiana plumbaginifolia}; contains Pfam profiles
PF00006: ATP synthase alpha/beta family
nucleotide-binding domain, PF00306: ATP synthase ab C
terminal, PF02874: ATP synthase alpha/beta family
beta-barrel domain; supporting cDNA
gi|26452102|dbj|AK118538.1|
Length = 556
Score = 53.2 bits (122), Expect = 1e-07
Identities = 38/116 (32%), Positives = 55/116 (47%), Gaps = 4/116 (3%)
Frame = +3
Query: 285 VLEVS---GSKAVVQV-FEGTSGIDAKNTLCEFTGDILRTPVSEDMLGRVFNGSGKPIDK 452
VLEVS G V + +GT G+ + TG + PV LGR+ N G+PID+
Sbjct: 121 VLEVSHHLGQNVVRTIAMDGTEGLVRGRKVLN-TGAPITVPVGRATLGRIMNVLGEPIDE 179
Query: 453 GPPILAEDFLDIQGQPINPWSRIYPEEMIQTGISAIDVMNSIARGQKIPIFSAAGL 620
I E +L I +E++ TGI +D++ RG KI +F AG+
Sbjct: 180 RGEIKTEHYLPIHRDAPALVDLATGQEILATGIKVVDLLAPYQRGGKIGLFGGAGV 235
>At2g07698.1 68415.m00949 ATP synthase alpha chain, mitochondrial,
putative very strong similarity to SP|P23413 ATP
synthase alpha chain, mitochondrial (EC 3.6.3.14)
{Brassica campestris}; contains Pfam profiles PF00006:
ATP synthase alpha/beta family nucleotide-binding
domain, PF00306: ATP synthase ab C terminal, PF02874:
ATP synthase alpha/beta family beta-barrel domain
Length = 777
Score = 48.8 bits (111), Expect = 3e-06
Identities = 31/105 (29%), Positives = 49/105 (46%)
Frame = +3
Query: 279 GQVLEVSGSKAVVQVFEGTSGIDAKNTLCEFTGDILRTPVSEDMLGRVFNGSGKPIDKGP 458
G L + + VF G + I + L + TG I+ P + MLGRV + G PID
Sbjct: 333 GMALNLENENVGIVVFGGDTAIK-EGDLVKRTGSIVDVPAGKAMLGRVVDAMGVPIDGKG 391
Query: 459 PILAEDFLDIQGQPINPWSRIYPEEMIQTGISAIDVMNSIARGQK 593
+ + ++ + R E +QTG+ A+D + I RGQ+
Sbjct: 392 ALSDHEQRRVEVKAPGILERKSVHEPMQTGLKAVDSLVPIGRGQR 436
>At1g78900.1 68414.m09198 vacuolar ATP synthase catalytic subunit A
/ V-ATPase A subunit / vacuolar proton pump alpha
subunit / V-ATPase 69 kDa subunit identical to SP|O23654
Vacuolar ATP synthase catalytic subunit A (EC 3.6.3.14)
(V-ATPase A subunit) (Vacuolar proton pump alpha
subunit) (V-ATPase 69 kDa subunit) {Arabidopsis
thaliana}
Length = 623
Score = 42.7 bits (96), Expect = 2e-04
Identities = 25/93 (26%), Positives = 49/93 (52%)
Frame = +3
Query: 168 YKTVSGVNGPLVILDEVKFPKFSEIVQLKLADGTLRSGQVLEVSGSKAVVQVFEGTSGID 347
Y V V+GP+V+ D + E+V++ D + G+++ + G A +QV+E T+G+
Sbjct: 21 YGYVRKVSGPVVVADGMAGAAMYELVRVG-HDNLI--GEIIRLEGDSATIQVYEETAGLT 77
Query: 348 AKNTLCEFTGDILRTPVSEDMLGRVFNGSGKPI 446
+ + T L + +LG +F+G +P+
Sbjct: 78 VNDPVLR-THKPLSVELGPGILGNIFDGIQRPL 109
>At5g52300.1 68418.m06491 low-temperature-responsive 65 kD protein
(LTI65) / desiccation-responsive protein 29B (RD29B)
nearly identical to SP|Q04980 Low-temperature-induced 65
kDa protein (Desiccation-responsive protein 29B)
{Arabidopsis thaliana}
Length = 619
Score = 29.9 bits (64), Expect = 1.5
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = -2
Query: 487 MSKKSSAKIGGPLSMGLPEPLNTRPNMSSETGVRRMSPVNSQSVF 353
++K S A+ GG G+ E TR ++ E+G+ R P + F
Sbjct: 309 INKNSPARFGGESKAGMEEDFPTRGDVKVESGLGRDLPTGTHDQF 353
>At1g49190.1 68414.m05515 two-component responsive regulator family
protein / response regulator family protein contains
Pfam profile: PF00072 response regulator receiver domain
;contains similarity to two-component response regulator
protein (ARR2) GI:4210451 from [Arabidopsis thaliana]
Length = 608
Score = 29.5 bits (63), Expect = 1.9
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = -2
Query: 391 VRRMSPVNSQSVFFASIPDVPSNTWTTALEPLTSS 287
V SP+ +Q F P P TWT ++P+ S+
Sbjct: 218 VNGYSPIMNQDNMFNKAPPKPRMTWTEVIQPVQSN 252
>At5g40000.1 68418.m04851 AAA-type ATPase family protein BCS1
nuclear gene encoding mitochondrial protein - Homo
sapiens, EMBL:AF026849 contains Pfam profile: ATPase
family PF00004
Length = 470
Score = 29.1 bits (62), Expect = 2.6
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Frame = +3
Query: 462 ILAEDFLDIQGQPINPWSRIYPEEMIQTGISAIDVM-NSIARGQKIPIFSAAGL 620
ILA+++LD+ G +P + +T IS DV N +AR Q+I + + L
Sbjct: 390 ILAKNYLDLDGDDAHPLFSEIKALLEETKISPADVAENLMARNQQIDVDKSLNL 443
>At1g52310.1 68414.m05902 protein kinase family protein / C-type
lectin domain-containing protein contains protein kinase
domain, Pfam:PF00069, PF00059 Lectin C-type domain
Length = 552
Score = 28.7 bits (61), Expect = 3.4
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
Frame = -2
Query: 379 SPVNSQSVFFASIPDVPSNTWTTALEPLTSST*PE----RRVPSASFSCT 242
S V QS+F + P V +N W L+P+ + PE ++V +SCT
Sbjct: 476 SSVGWQSIFEWATPLVQANRWLEILDPVITCGLPEACVVQKVVDLVYSCT 525
>At5g21160.1 68418.m02528 La domain-containing protein /
proline-rich family protein contains proline-rich
extensin domains, INTERPRO:IPR002965, PF05383: La domain
Length = 826
Score = 28.3 bits (60), Expect = 4.5
Identities = 11/44 (25%), Positives = 26/44 (59%)
Frame = +3
Query: 441 PIDKGPPILAEDFLDIQGQPINPWSRIYPEEMIQTGISAIDVMN 572
P+++GPPIL+ + LD++ + + + +E ++ I +M+
Sbjct: 263 PVNQGPPILSPEKLDLRDRVLKQVEYYFSDENLENDHYLISLMD 306
>At3g33530.1 68416.m04290 transducin family protein / WD-40 repeat
family protein similar to WD-repeat protein 11
(SP:Q9BZH6) {Homo sapiens}; contains Pfam PF00400: WD
domain, G-beta repeat (4 copies, 3
weak)|2763187|gb|T46504.1|T46504
Length = 1345
Score = 27.9 bits (59), Expect = 5.9
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = -1
Query: 521 DT*PWVDGLTLDVQEVLGQDWGTLVDGFAGTVEHATQHVFR 399
D+ W D TL + G D+ ++ +A V HA +V+R
Sbjct: 1203 DSGRWTDAATLAATHLEGSDYARVLQRWADHVLHAEHNVWR 1243
>At1g44910.1 68414.m05146 FF domain-containing protein / WW
domain-containing protein contains Pfam profiles
PF01846: FF domain, PF00397: WW domain
Length = 946
Score = 27.9 bits (59), Expect = 5.9
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +1
Query: 436 ANPSTRVPQSWPRTSWTSRVSPSTHGHVS 522
++P T VP S+P+ TS V P++ HV+
Sbjct: 104 SSPYTFVPSSYPQQQPTSLVQPNSQMHVA 132
>At3g10650.1 68416.m01281 expressed protein
Length = 1309
Score = 27.5 bits (58), Expect = 7.8
Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Frame = -2
Query: 370 NSQSVFFASIPDVPSNTWTTALEPLTSST*PERRVPSASFSC-TISENLGNLT 215
NS S+F SN+ +T+ PL+S++ + P+A FS +SE+ G ++
Sbjct: 799 NSSSIFGKLPTSNDSNSQSTSASPLSSTSPFKFGQPAAPFSAPAVSESSGQIS 851
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,281,066
Number of Sequences: 28952
Number of extensions: 359296
Number of successful extensions: 1021
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 983
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1019
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1295224128
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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