Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov10a04
(593 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_06_0131 - 25888434-25888931,25889105-25889155,25889249-258893... 105 2e-23
01_06_0649 + 30861946-30862179,30862702-30862824,30863104-308631... 99 1e-21
10_08_0930 - 21641818-21642240,21642731-21642820,21642902-216429... 92 4e-19
06_01_0372 + 2684208-2684390,2684867-2684968,2685197-2685290,268... 81 5e-16
01_03_0017 + 11677029-11677100,11677992-11678030,11678169-116783... 36 0.018
12_02_0068 + 13155402-13155568,13155674-13155767,13157748-131577... 36 0.024
06_02_0081 - 11527339-11527652,11528166-11528272,11528361-115284... 33 0.13
01_03_0205 + 13777918-13778015,13778402-13778624,13779022-137791... 33 0.13
05_01_0120 - 828834-831143 33 0.17
12_01_0219 - 1651833-1651987,1652172-1652471,1652889-1652967,165... 33 0.23
11_01_0217 - 1698721-1698875,1699122-1699421,1699840-1699918,169... 33 0.23
11_06_0738 - 26807046-26807129,26807720-26807957,26809374-268115... 31 0.92
05_06_0032 - 25067996-25068156,25068746-25068815,25069385-250695... 29 2.8
12_02_0661 + 21644328-21644517,21644697-21644875,21644899-216459... 29 3.7
04_01_0442 + 5770019-5771626,5773500-5773571,5774508-5774603,577... 29 3.7
03_02_0234 + 6625417-6626184,6626314-6626339,6626435-6626531,662... 28 4.9
01_03_0306 + 14875755-14876822 28 4.9
12_01_0720 + 6347765-6347839,6347936-6348004,6348221-6348256,634... 28 6.5
06_01_0744 + 5565939-5566249,5566383-5566476,5569067-5569124,556... 28 6.5
05_04_0307 + 20066169-20066410,20066803-20066858,20067490-200675... 28 6.5
03_01_0043 + 369916-370357,370475-370719 28 6.5
07_03_0796 + 21572131-21572204,21573427-21573482,21573580-215736... 27 8.5
04_01_0576 + 7466032-7466802,7468382-7468444,7469043-7469122,746... 27 8.5
01_03_0088 + 12327339-12328092,12329474-12329601,12330249-123304... 27 8.5
>05_06_0131 -
25888434-25888931,25889105-25889155,25889249-25889331,
25889733-25889826,25890188-25890310,25890909-25891154
Length = 364
Score = 105 bits (253), Expect = 2e-23
Identities = 64/157 (40%), Positives = 88/157 (56%), Gaps = 1/157 (0%)
Frame = +3
Query: 120 ARVTFYPTLLYNVFMEKVTSR-RWYDRIDDTVILGALPFQGMTKQLKEEENVKGVVSMNE 296
ARV FYPTLLYNV + S RW+DRID V+LGA+PF LK + V+GVV++NE
Sbjct: 53 ARVLFYPTLLYNVLRNRFESEFRWWDRIDQYVLLGAVPFSSDVPHLK-QLGVRGVVTLNE 111
Query: 297 TYELQLFSNDAERWREHKVEFLQLATTDIFEAPNQDKLFEGVVFINRFLPLDNKLSGVPA 476
+YE + ++ H + L++ T D AP+ + + + V FI+R N G
Sbjct: 112 SYETLV---PTSLYQAHGINHLEIPTRDYLFAPSLEDICQAVDFIHR-----NASQG--- 160
Query: 477 DVGQINTGTVYVHCKAGRTRSATLVGCYLMMKNGWSP 587
G+ YVHCKAGR RS T+V CYL+ +P
Sbjct: 161 -------GSTYVHCKAGRGRSTTIVLCYLIKYRNMTP 190
>01_06_0649 +
30861946-30862179,30862702-30862824,30863104-30863197,
30863819-30863901,30863984-30864073,30864176-30864562,
30864903-30864991,30867801-30867907,30868431-30868822
Length = 532
Score = 99 bits (238), Expect = 1e-21
Identities = 61/157 (38%), Positives = 85/157 (54%), Gaps = 1/157 (0%)
Frame = +3
Query: 120 ARVTFYPTLLYNVFMEKVTSR-RWYDRIDDTVILGALPFQGMTKQLKEEENVKGVVSMNE 296
ARV FYPTLLYNV + + RW+DR+D ++LGA+PF +LK + V+GVV++NE
Sbjct: 49 ARVLFYPTLLYNVLRNRFEAEFRWWDRVDQYILLGAVPFPSDVPRLK-QLGVQGVVTLNE 107
Query: 297 TYELQLFSNDAERWREHKVEFLQLATTDIFEAPNQDKLFEGVVFINRFLPLDNKLSGVPA 476
YE + ++ H ++ L + T D AP + + + FI+R N G
Sbjct: 108 AYETLV---PTSLYQAHGIDHLIIPTRDYLFAPALQDICQAIDFIHR-----NASEG--- 156
Query: 477 DVGQINTGTVYVHCKAGRTRSATLVGCYLMMKNGWSP 587
G YVHCKAGR RS T+V CYL+ SP
Sbjct: 157 -------GITYVHCKAGRGRSTTIVLCYLIKYRSMSP 186
>10_08_0930 -
21641818-21642240,21642731-21642820,21642902-21642984,
21643512-21643605,21644366-21644488,21644893-21645168
Length = 362
Score = 91.9 bits (218), Expect = 4e-19
Identities = 63/159 (39%), Positives = 85/159 (53%), Gaps = 1/159 (0%)
Frame = +3
Query: 120 ARVTFYPTLLYNVFMEKVTSR-RWYDRIDDTVILGALPFQGMTKQLKEEENVKGVVSMNE 296
AR+ FYPTL+YNV + W+D++D+ V+LGA+PF +LKE V GVV++NE
Sbjct: 63 ARMLFYPTLVYNVVRNRFEPHFHWWDQVDEHVLLGAVPFPSDVLRLKEL-GVCGVVTLNE 121
Query: 297 TYELQLFSNDAERWREHKVEFLQLATTDIFEAPNQDKLFEGVVFINRFLPLDNKLSGVPA 476
+YE +L + H +E L L T D AP+ + L FI+R N L G
Sbjct: 122 SYE-RLVPRCL--YEAHGIENLVLPTRDYLYAPSFENLCRAADFIHR-----NALCGK-- 171
Query: 477 DVGQINTGTVYVHCKAGRTRSATLVGCYLMMKNGWSPHE 593
YVHCKAGR RS T+V CYL+ +P E
Sbjct: 172 --------LTYVHCKAGRGRSTTVVLCYLVQYKQMTPAE 202
>06_01_0372 +
2684208-2684390,2684867-2684968,2685197-2685290,
2685450-2685532,2685684-2685773,2686931-2687173
Length = 264
Score = 81.4 bits (192), Expect = 5e-16
Identities = 55/157 (35%), Positives = 81/157 (51%), Gaps = 1/157 (0%)
Frame = +3
Query: 120 ARVTFYPTLLYNVFMEKVTSR-RWYDRIDDTVILGALPFQGMTKQLKEEENVKGVVSMNE 296
AR FYPTLLYNV KV + RW+D +D ++LGA+PF+ +L ++ V GV+++NE
Sbjct: 32 ARALFYPTLLYNVVRSKVQAEFRWWDEVDQFILLGAVPFRRDVPRL-QKLGVYGVITLNE 90
Query: 297 TYELQLFSNDAERWREHKVEFLQLATTDIFEAPNQDKLFEGVVFINRFLPLDNKLSGVPA 476
+E ++ L + T D AP+ + V FI+R A
Sbjct: 91 PFET----------LSRGIDHLVIPTRDYMFAPSLVDISRAVDFIHR-----------NA 129
Query: 477 DVGQINTGTVYVHCKAGRTRSATLVGCYLMMKNGWSP 587
G++ Y+HCKAGR RS T+V CYL+ +P
Sbjct: 130 SCGRM----TYIHCKAGRGRSTTIVLCYLVKYKNMTP 162
>01_03_0017 +
11677029-11677100,11677992-11678030,11678169-11678341,
11679068-11679284,11679518-11679688,11679781-11679941,
11680025-11681069,11681320-11681466,11681547-11681774,
11681863-11682020,11682124-11682493
Length = 926
Score = 36.3 bits (80), Expect = 0.018
Identities = 15/27 (55%), Positives = 20/27 (74%)
Frame = +3
Query: 498 GTVYVHCKAGRTRSATLVGCYLMMKNG 578
G V VHC G++RSAT+V YLM++ G
Sbjct: 779 GKVLVHCFEGKSRSATIVLAYLMLRKG 805
>12_02_0068 +
13155402-13155568,13155674-13155767,13157748-13157771,
13157956-13158013,13158123-13158166,13158254-13158481
Length = 204
Score = 35.9 bits (79), Expect = 0.024
Identities = 24/85 (28%), Positives = 40/85 (47%), Gaps = 3/85 (3%)
Frame = +3
Query: 330 ERWREHKVEFLQLATTDIFE---APNQDKLFEGVVFINRFLPLDNKLSGVPADVGQINTG 500
E + E EFL+ +F+ N+ L G N +P+D + G + +
Sbjct: 61 EPYMETNAEFLKAEGIRLFQFGIEGNKLCLTTGEEDPNVSIPVD-AIMGALRVILDVRNH 119
Query: 501 TVYVHCKAGRTRSATLVGCYLMMKN 575
V +HCK G+ R+ LVGC+ ++N
Sbjct: 120 PVLIHCKRGKHRTGCLVGCFRKLQN 144
>06_02_0081 -
11527339-11527652,11528166-11528272,11528361-11528418,
11529240-11529267,11530233-11530499
Length = 257
Score = 33.5 bits (73), Expect = 0.13
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = +3
Query: 504 VYVHCKAGRTRSATLVGCYLMMKNGW 581
V VHC +G++RSA V +LM GW
Sbjct: 108 VLVHCMSGKSRSAAFVIAFLMKTKGW 133
>01_03_0205 +
13777918-13778015,13778402-13778624,13779022-13779198,
13779277-13779437,13779520-13780519,13780923-13781069,
13781149-13781376,13781471-13781628,13781807-13782161
Length = 848
Score = 33.5 bits (73), Expect = 0.13
Identities = 14/25 (56%), Positives = 19/25 (76%)
Frame = +3
Query: 498 GTVYVHCKAGRTRSATLVGCYLMMK 572
G V VHC G++RSAT+V YLM++
Sbjct: 706 GKVLVHCFEGKSRSATVVLAYLMLR 730
>05_01_0120 - 828834-831143
Length = 769
Score = 33.1 bits (72), Expect = 0.17
Identities = 15/29 (51%), Positives = 19/29 (65%)
Frame = +3
Query: 498 GTVYVHCKAGRTRSATLVGCYLMMKNGWS 584
G V+VHC G +RS +LV YLM + G S
Sbjct: 224 GRVFVHCCQGVSRSTSLVIAYLMWREGQS 252
>12_01_0219 -
1651833-1651987,1652172-1652471,1652889-1652967,
1653047-1653111,1653236-1653288,1653666-1654084
Length = 356
Score = 32.7 bits (71), Expect = 0.23
Identities = 14/23 (60%), Positives = 17/23 (73%)
Frame = +3
Query: 498 GTVYVHCKAGRTRSATLVGCYLM 566
G V VHC AG +RSAT++ YLM
Sbjct: 127 GNVLVHCFAGVSRSATIIVAYLM 149
>11_01_0217 -
1698721-1698875,1699122-1699421,1699840-1699918,
1699998-1700062,1700187-1700239,1700654-1701072
Length = 356
Score = 32.7 bits (71), Expect = 0.23
Identities = 14/23 (60%), Positives = 17/23 (73%)
Frame = +3
Query: 498 GTVYVHCKAGRTRSATLVGCYLM 566
G V VHC AG +RSAT++ YLM
Sbjct: 127 GNVLVHCFAGVSRSATIIVAYLM 149
>11_06_0738 - 26807046-26807129,26807720-26807957,26809374-26811509,
26812145-26813253
Length = 1188
Score = 30.7 bits (66), Expect = 0.92
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = -1
Query: 194 VIPASTGHLLH-EDIVQKGRVECNSREHCRTHGES 93
+IP HL E+I K RV C + +HCR ES
Sbjct: 973 IIPVGIEHLSGLEEISAKIRVACTAHDHCRRFAES 1007
>05_06_0032 -
25067996-25068156,25068746-25068815,25069385-25069532,
25069611-25069726,25069799-25069877,25069960-25070030,
25070139-25070348,25070445-25070453,25070824-25070968,
25071297-25071332,25071428-25071494,25071591-25071624
Length = 381
Score = 29.1 bits (62), Expect = 2.8
Identities = 10/32 (31%), Positives = 20/32 (62%)
Frame = -2
Query: 397 LGASKISVVANCRNSTLCSRHLSASLENNCSS 302
+GA ++ ++ANC + ++HL S+ +C S
Sbjct: 288 VGAGRLCLIANCEYTVPLAKHLEGSIFMDCGS 319
>12_02_0661 +
21644328-21644517,21644697-21644875,21644899-21645922,
21647108-21647262
Length = 515
Score = 28.7 bits (61), Expect = 3.7
Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Frame = +3
Query: 261 EENVKGVVSMNETYELQLFSNDAERWREHKVEFLQL-ATTDIFEA 392
E + K V+S + YE++ N++ER HK L+ A D+F++
Sbjct: 210 ERDKKSVLSDSTKYEVESIHNESERNTPHKKRGLECKACEDVFDS 254
>04_01_0442 +
5770019-5771626,5773500-5773571,5774508-5774603,
5774739-5774885,5775429-5775560
Length = 684
Score = 28.7 bits (61), Expect = 3.7
Identities = 16/43 (37%), Positives = 21/43 (48%)
Frame = +2
Query: 398 SRQIIRRSRVYKQIPAVRQQTVGSPCRRGADQHRHRIRSLQGG 526
S I+RRS +P R ++ S +RG H IRS Q G
Sbjct: 447 SVDIVRRSLQAASVPQSRGSSITSQQQRGHSSTSHEIRSHQPG 489
>03_02_0234 +
6625417-6626184,6626314-6626339,6626435-6626531,
6627009-6627116,6627194-6627328,6627429-6627528,
6627763-6627974,6628060-6628125,6628231-6628464,
6628583-6628641,6628716-6628782,6628863-6629192,
6629267-6629335,6629417-6629503,6629605-6629692,
6630057-6630178,6630251-6630355,6630442-6630485,
6630558-6630627,6630711-6630814,6630980-6631189,
6632935-6633018,6633291-6634003,6634115-6634649,
6634703-6634789,6634826-6634970,6635049-6635125,
6635215-6635359,6635462-6635626,6635725-6635958
Length = 1761
Score = 28.3 bits (60), Expect = 4.9
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = -1
Query: 581 PTVFHHKVAAHERGASRPTRLAVNVYGAGVDLPHVGRDSRQFVV 450
PT F V A+ +R R A+ + A DLP VG D + V+
Sbjct: 753 PTTFSQSVVAYNEVDTRCLRKALLLADAISDLPKVGNDQPKDVI 796
>01_03_0306 + 14875755-14876822
Length = 355
Score = 28.3 bits (60), Expect = 4.9
Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Frame = -2
Query: 394 GASKI--SVVANCRNSTLCSRHLSASLENNCSSYVSFIETTPFTFSSSFNCFVI 239
G S++ S+ NC NS+ S N +S+ + T+P+ FS ++N FV+
Sbjct: 81 GRSRVLGSITTNCYNSSTGSA--------NVNSWWMDLSTSPYRFSDAYNTFVV 126
>12_01_0720 +
6347765-6347839,6347936-6348004,6348221-6348256,
6348342-6348647,6348887-6348901
Length = 166
Score = 27.9 bits (59), Expect = 6.5
Identities = 14/40 (35%), Positives = 24/40 (60%)
Frame = -2
Query: 445 GRNLFINTTPSNNLS*LGASKISVVANCRNSTLCSRHLSA 326
GR+L T S +S +G + +V+A CR+ S+H++A
Sbjct: 79 GRSLLAGVTVSVLVSCVGLALCAVLAGCRDFVTGSQHVTA 118
>06_01_0744 +
5565939-5566249,5566383-5566476,5569067-5569124,
5569214-5569257,5569366-5569539
Length = 226
Score = 27.9 bits (59), Expect = 6.5
Identities = 11/36 (30%), Positives = 19/36 (52%)
Frame = +3
Query: 450 DNKLSGVPADVGQINTGTVYVHCKAGRTRSATLVGC 557
D+K+ V + + +HCK G+ R+ +VGC
Sbjct: 143 DDKIREALKVVLDVKNQPLLIHCKRGKHRTGCVVGC 178
>05_04_0307 +
20066169-20066410,20066803-20066858,20067490-20067581,
20068400-20068502,20068623-20068760,20068898-20069148
Length = 293
Score = 27.9 bits (59), Expect = 6.5
Identities = 10/35 (28%), Positives = 23/35 (65%)
Frame = +3
Query: 333 RWREHKVEFLQLATTDIFEAPNQDKLFEGVVFINR 437
+W EH++++L D+ +PN +++ + V ++NR
Sbjct: 205 KWGEHELDYLLFMVRDVELSPNPEEVAD-VKYVNR 238
>03_01_0043 + 369916-370357,370475-370719
Length = 228
Score = 27.9 bits (59), Expect = 6.5
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = +3
Query: 216 LGALPFQGMTKQLKEEENVKGVVSMNETYELQLFSNDAERWREHK 350
L L F M K K+EE +K V + E+++ +E W+ K
Sbjct: 130 LFGLAFGAMAKDGKDEELLKYVAGDGDVVEVEIKEKGSEEWKALK 174
>07_03_0796 +
21572131-21572204,21573427-21573482,21573580-21573671,
21574103-21574205,21574297-21574434,21574654-21574907
Length = 238
Score = 27.5 bits (58), Expect = 8.5
Identities = 10/35 (28%), Positives = 22/35 (62%)
Frame = +3
Query: 333 RWREHKVEFLQLATTDIFEAPNQDKLFEGVVFINR 437
+W EH++++L D+ PN D++ + V +++R
Sbjct: 149 KWGEHELDYLLFIVRDVKVVPNPDEVAD-VKYVSR 182
>04_01_0576 +
7466032-7466802,7468382-7468444,7469043-7469122,
7469505-7469622,7470035-7470067,7470400-7470474,
7470887-7471043,7471142-7471230,7472041-7472294,
7472977-7473148,7473250-7473333,7473626-7473730,
7474055-7474363,7474622-7474756,7476236-7476317,
7476423-7476502,7476622-7476783,7477071-7477138,
7478422-7478502,7478634-7478760,7478816-7478879,
7480808-7480854,7481042-7481335
Length = 1149
Score = 27.5 bits (58), Expect = 8.5
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = +3
Query: 453 NKLSGVPADVGQINTGTVYVHCKAGRTRSATLVG 554
N + V ADV + NT V+ C A R A L+G
Sbjct: 541 NSIKNVRADVLRENTEAVFAACDAAHGRWAKLLG 574
>01_03_0088 +
12327339-12328092,12329474-12329601,12330249-12330474,
12332638-12332765,12332880-12333033,12333408-12333841
Length = 607
Score = 27.5 bits (58), Expect = 8.5
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +3
Query: 195 RIDDTVILGALPFQGMTKQLKEE 263
R++ +V LGALP + KQL +E
Sbjct: 585 RLESSVPLGALPIDAVVKQLNDE 607
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,119,551
Number of Sequences: 37544
Number of extensions: 370635
Number of successful extensions: 999
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 969
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 991
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1411925004
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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