Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10a04
         (593 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12537| Best HMM Match : DSPc (HMM E-Value=1.3e-09)                 155   2e-38
SB_225| Best HMM Match : DSPc (HMM E-Value=8.6e-05)                   124   7e-29
SB_10767| Best HMM Match : DSPc (HMM E-Value=2.5e-07)                  36   0.019
SB_30460| Best HMM Match : DSPc (HMM E-Value=2.5e-38)                  36   0.025
SB_36904| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.033
SB_59355| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.40 
SB_11234| Best HMM Match : DSPc (HMM E-Value=2.4e-29)                  31   0.53 
SB_10701| Best HMM Match : DSPc (HMM E-Value=0)                        31   0.93 
SB_35774| Best HMM Match : DSPc (HMM E-Value=1e-26)                    31   0.93 
SB_33676| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.7  
SB_41282| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.9  
SB_51737| Best HMM Match : Intron_maturas2 (HMM E-Value=7.9)           27   8.6  
SB_26233| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.6  
SB_55463| Best HMM Match : OPA3 (HMM E-Value=0)                        27   8.6  
SB_25594| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.6  
SB_702| Best HMM Match : No HMM Matches (HMM E-Value=.)                27   8.6  

>SB_12537| Best HMM Match : DSPc (HMM E-Value=1.3e-09)
          Length = 195

 Score =  155 bits (377), Expect = 2e-38
 Identities = 85/164 (51%), Positives = 106/164 (64%)
 Frame = +3

Query: 102 MSTAMFARVTFYPTLLYNVFMEKVTSRRWYDRIDDTVILGALPFQGMTKQLKEEENVKGV 281
           +S+++ ARV FYPTLL+NV ME   SRRWYDRID TVILGALPF+ +T++L EEENV+ V
Sbjct: 13  LSSSVGARVLFYPTLLWNVVMEG-GSRRWYDRIDSTVILGALPFKSLTQKLVEEENVRAV 71

Query: 282 VSMNETYELQLFSNDAERWREHKVEFLQLATTDIFEAPNQDKLFEGVVFINRFLPLDNKL 461
           V++NE +E + F N +E W E  V+ L+LAT D   AP+ D L EGV FI          
Sbjct: 72  VTLNEEFETKHFCNTSEEWSEWGVKQLRLATVDFGNAPSLDNLSEGVKFIEEI------- 124

Query: 462 SGVPADVGQINTGTVYVHCKAGRTRSATLVGCYLMMKNGWSPHE 593
                   +    +VYVHCKAGR RSATLV CYLM     +P E
Sbjct: 125 --------RSKGDSVYVHCKAGRGRSATLVACYLMKNMALNPEE 160


>SB_225| Best HMM Match : DSPc (HMM E-Value=8.6e-05)
          Length = 881

 Score =  124 bits (298), Expect = 7e-29
 Identities = 73/149 (48%), Positives = 92/149 (61%)
 Frame = +3

Query: 120 ARVTFYPTLLYNVFMEKVTSRRWYDRIDDTVILGALPFQGMTKQLKEEENVKGVVSMNET 299
           ARV F+P+LL+ V  E   SRRW+DRID TVILGALPF+  T++L +E NVKGV+++NE 
Sbjct: 81  ARVLFFPSLLWIVATES-RSRRWFDRIDSTVILGALPFKSQTQKLIDE-NVKGVITLNEE 138

Query: 300 YELQLFSNDAERWREHKVEFLQLATTDIFEAPNQDKLFEGVVFINRFLPLDNKLSGVPAD 479
           +E +   N  + W    V  L+LAT D   AP+  +L EGV FI      D +  G    
Sbjct: 139 FETKHLCNSKQEWFAWGVTQLRLATVDFGNAPSFAQLLEGVKFIE-----DMRSKG---- 189

Query: 480 VGQINTGTVYVHCKAGRTRSATLVGCYLM 566
                  +VYVHCKAGR RS TLV CYLM
Sbjct: 190 ------DSVYVHCKAGRGRSTTLVACYLM 212


>SB_10767| Best HMM Match : DSPc (HMM E-Value=2.5e-07)
          Length = 324

 Score = 36.3 bits (80), Expect = 0.019
 Identities = 31/134 (23%), Positives = 60/134 (44%), Gaps = 2/134 (1%)
 Frame = +3

Query: 189 YDRIDDTVILGALP-FQGMTKQLKEEENVKGVVSMNETYELQLFSNDAERWREHKVEFLQ 365
           Y +I + + LG+ P  +     LK +  +  V+S+    ++Q   +   R+ ++    L 
Sbjct: 151 YCKIFENIWLGSCPRLRSHIMDLKSQ-GITAVISLQTASDIQKHCSGIYRYNQN----LP 205

Query: 366 LATTDIFEAPNQDKLFEGVVFINRFLPLDNKLSGVPADVGQINTG-TVYVHCKAGRTRSA 542
           +    +++      ++  +  ++    ++N   GV    G +N G  VYVHC  G  RS 
Sbjct: 206 ITLKKLYKEEGISYIWLPMEDLSTESRIENLPQGVYLLHGLLNNGHRVYVHCNGGVGRST 265

Query: 543 TLVGCYLMMKNGWS 584
            +V  +LM    WS
Sbjct: 266 AIVCGFLMYVLHWS 279


>SB_30460| Best HMM Match : DSPc (HMM E-Value=2.5e-38)
          Length = 550

 Score = 35.9 bits (79), Expect = 0.025
 Identities = 16/23 (69%), Positives = 18/23 (78%)
 Frame = +3

Query: 498 GTVYVHCKAGRTRSATLVGCYLM 566
           G VYVHCK G +RSATLV  YL+
Sbjct: 487 GRVYVHCKEGISRSATLVLAYLI 509


>SB_36904| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 318

 Score = 35.5 bits (78), Expect = 0.033
 Identities = 14/32 (43%), Positives = 21/32 (65%)
 Frame = +3

Query: 498 GTVYVHCKAGRTRSATLVGCYLMMKNGWSPHE 593
           G V +HC+AG  R+ TL+ CYL+ +  +S  E
Sbjct: 237 GAVAIHCRAGLGRTGTLIACYLIKQYKFSAAE 268


>SB_59355| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 165

 Score = 31.9 bits (69), Expect = 0.40
 Identities = 16/39 (41%), Positives = 22/39 (56%)
 Frame = +3

Query: 477 DVGQINTGTVYVHCKAGRTRSATLVGCYLMMKNGWSPHE 593
           D  +    +V VHC AG +RSAT+   Y+M   G S +E
Sbjct: 91  DEARSRGSSVLVHCHAGVSRSATVTVAYVMQHLGLSLNE 129


>SB_11234| Best HMM Match : DSPc (HMM E-Value=2.4e-29)
          Length = 2072

 Score = 31.5 bits (68), Expect = 0.53
 Identities = 15/23 (65%), Positives = 17/23 (73%)
 Frame = +3

Query: 498 GTVYVHCKAGRTRSATLVGCYLM 566
           G V VHC AG +RSA+LV  YLM
Sbjct: 70  GKVLVHCIAGVSRSASLVIAYLM 92


>SB_10701| Best HMM Match : DSPc (HMM E-Value=0)
          Length = 365

 Score = 30.7 bits (66), Expect = 0.93
 Identities = 13/25 (52%), Positives = 18/25 (72%)
 Frame = +3

Query: 498 GTVYVHCKAGRTRSATLVGCYLMMK 572
           G V VHC+AG +RSAT+   YL+ +
Sbjct: 257 GRVLVHCQAGISRSATICLAYLISR 281


>SB_35774| Best HMM Match : DSPc (HMM E-Value=1e-26)
          Length = 1418

 Score = 30.7 bits (66), Expect = 0.93
 Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 3/70 (4%)
 Frame = +3

Query: 384 FEAPNQDKLFE-GVVFI-NRFLPLDNKLSGVPADVGQINTGT-VYVHCKAGRTRSATLVG 554
           + A N ++L E GV ++ N    +DN  +G        + G+ V VHCK G +RSA+ V 
Sbjct: 287 WNASNLEELKENGVEYVLNITKEIDNFFAGTFTYFNIRDKGSKVLVHCKRGISRSASTVI 346

Query: 555 CYLMMKNGWS 584
            Y M + G S
Sbjct: 347 AYGMKEYGTS 356


>SB_33676| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 828

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +3

Query: 498 GTVYVHCKAGRTRSATLVGCYLMMKNGWS 584
           G V VHC  G +RS+++   YL+    W+
Sbjct: 755 GCVMVHCNMGVSRSSSVTLAYLIKSKRWT 783


>SB_41282| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 410

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +3

Query: 492 NTGTVYVHCKAGRTRSATLVGCYLM 566
           N     +HCKAG+ R+  ++  YL+
Sbjct: 58  NLNVAIIHCKAGKGRTGVMICAYLL 82


>SB_51737| Best HMM Match : Intron_maturas2 (HMM E-Value=7.9)
          Length = 247

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 17/56 (30%), Positives = 25/56 (44%)
 Frame = +3

Query: 186 WYDRIDDTVILGALPFQGMTKQLKEEENVKGVVSMNETYELQLFSNDAERWREHKV 353
           W  R  D ++   +P       LK   N+  +       EL+ +SND  + REHKV
Sbjct: 30  WPSRARDRIVATRIPHM----HLKGRANLSNLYR-TAVMELRPYSNDTRQAREHKV 80


>SB_26233| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 463

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
 Frame = +3

Query: 249 QLKEEENVKGVVS-MNETYELQLFSNDAERWREHKVEFLQLATTDIFEAPNQDKL 410
           Q K EE  KG V     T E +    +AER ++ K+E L     ++ E   Q+KL
Sbjct: 259 QEKVEEKEKGEVEDAQTTEEEEKQKEEAERKKQEKLEKLAKKKEELKERKRQEKL 313


>SB_55463| Best HMM Match : OPA3 (HMM E-Value=0)
          Length = 387

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -1

Query: 101 GESFVFVVGIELIFFEYSR 45
           GE F+F VG+  + FEY R
Sbjct: 199 GEGFIFGVGVATLLFEYRR 217


>SB_25594| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1084

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 10/40 (25%), Positives = 21/40 (52%)
 Frame = +3

Query: 243 TKQLKEEENVKGVVSMNETYELQLFSNDAERWREHKVEFL 362
           +K L+  EN++G    +  YE++   N+  +W    V ++
Sbjct: 731 SKFLERVENIRGKAGTDSEYEVENLDNELFKWSFESVAYM 770


>SB_702| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1396

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 19/50 (38%), Positives = 26/50 (52%)
 Frame = +2

Query: 392  PQSRQIIRRSRVYKQIPAVRQQTVGSPCRRGADQHRHRIRSLQGG*DEKR 541
            PQSR   RR+  Y    +  +  + S  RR +D   HR RS +GG  E+R
Sbjct: 1202 PQSRPRKRRNGAYLDCGSDNKNPLSSQRRRSSDMRAHR-RS-RGGKVERR 1249


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,829,125
Number of Sequences: 59808
Number of extensions: 441855
Number of successful extensions: 1491
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1377
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1487
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1427401750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)