Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10a04
         (593 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor prot...    25   0.56 
S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor prot...    24   0.98 
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    23   2.3  
AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    22   3.9  
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    22   3.9  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   9.1  

>S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor
           protein.
          Length = 168

 Score = 25.0 bits (52), Expect = 0.56
 Identities = 12/45 (26%), Positives = 24/45 (53%)
 Frame = -2

Query: 385 KISVVANCRNSTLCSRHLSASLENNCSSYVSFIETTPFTFSSSFN 251
           ++S    CRN + CS H +A+  +  + +  +++ +  TFS   N
Sbjct: 106 RMSADGGCRNFSTCSSHPTAAFISYGTLFFIYVQPSA-TFSLDLN 149


>S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor
           protein.
          Length = 169

 Score = 24.2 bits (50), Expect = 0.98
 Identities = 12/45 (26%), Positives = 23/45 (51%)
 Frame = -2

Query: 385 KISVVANCRNSTLCSRHLSASLENNCSSYVSFIETTPFTFSSSFN 251
           ++S    CRN + CS H +A+  +  + +  ++  +  TFS   N
Sbjct: 107 RMSADGGCRNFSTCSSHPTAAFISYGTLFFIYVHPSA-TFSLDLN 150


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = +3

Query: 243 TKQLKEEENVKGV 281
           TKQ+K+E N KGV
Sbjct: 542 TKQIKDEANKKGV 554


>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +3

Query: 225 LPFQGMTKQLKEEENVKGVV 284
           L  Q ++KQ+ EE+  KG++
Sbjct: 38  LQVQHISKQISEEQRYKGMI 57


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +3

Query: 225 LPFQGMTKQLKEEENVKGVV 284
           L  Q ++KQ+ EE+  KG++
Sbjct: 38  LQVQHISKQISEEQRYKGMI 57


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +3

Query: 246 KQLKEEENVKGVVSMNETYELQLFSND 326
           K+LKEE N++  V+      +Q   ND
Sbjct: 413 KRLKEEANIRCHVAGEPLPRVQWLKND 439


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,895
Number of Sequences: 438
Number of extensions: 3955
Number of successful extensions: 11
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17359926
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)