Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10a01
         (774 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin Nup132|Schizosa...    29   0.98 
SPBC1709.03 |||conserved fungal protein|Schizosaccharomyces pomb...    28   1.7  
SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces ...    25   9.1  

>SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin
           Nup132|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1162

 Score = 28.7 bits (61), Expect = 0.98
 Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
 Frame = -3

Query: 265 LLYYLYRYNFLVSVLF-YNKIICKRVLLILFEI*LNVFVENALPIACIGENLHNYSSLNS 89
           L Y LY  N L   L  Y  +   +   IL++     FVEN + +  +  +  N S L  
Sbjct: 801 LCYQLYEDNELTDALNNYLDLFGIKFAFILYDY----FVENGMALELLNSDRFNKSYLKQ 856

Query: 88  FFYAREHH 65
           FF +R+++
Sbjct: 857 FFKSRDYN 864


>SPBC1709.03 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 398

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = -3

Query: 127 IGENLHNYSSLNSFFYARE 71
           I E LH++S L+SFFYA +
Sbjct: 45  INEMLHSHSELSSFFYAEK 63


>SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 582

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 16/52 (30%), Positives = 22/52 (42%)
 Frame = -2

Query: 593 HPSNLSISLRYADEHSTIWPLPDITSFCLANILKAPSFDVK*TIISSENITT 438
           HPS  + S+ Y D      PL     F LA  L   S     T + +E +T+
Sbjct: 48  HPSTHNSSVAYVDSQDNKPPLVSTLHFSLAPSLSPSSAQSHNTALITEPLTS 99


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,567,839
Number of Sequences: 5004
Number of extensions: 44686
Number of successful extensions: 106
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 373338084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)