Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10a01
         (774 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_30514| Best HMM Match : 2OG-FeII_Oxy (HMM E-Value=1.2)              56   3e-08
SB_44957| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.6  

>SB_30514| Best HMM Match : 2OG-FeII_Oxy (HMM E-Value=1.2)
          Length = 249

 Score = 56.0 bits (129), Expect = 3e-08
 Identities = 33/90 (36%), Positives = 46/90 (51%)
 Frame = +1

Query: 502 FAKQNEVISGKGQIVECSSAYLREIDKFEGCFPKQCKRFVTDKVITDKEVDELLMIAXXX 681
           F   ++ +S K   V+CS+ Y     KF+ C PK+C R V D V++ +E   L  +A   
Sbjct: 4   FVSVDDSVSRKFLNVKCSNDYGT---KFKSCVPKKCGRAVMDDVVSFEEAVYLADLAKRG 60

Query: 682 XXXXXXXXXXXILDLHSGALSMGQHFXNFY 771
                      ILDLHSGAL+ G+ F N Y
Sbjct: 61  MKHGGSSGGPTILDLHSGALTYGEKFVNIY 90


>SB_44957| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1336

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 14/45 (31%), Positives = 25/45 (55%)
 Frame = +1

Query: 397 SPKSNIPLRVLSRAVVIFSLLIIVYFTSNDGAFKIFAKQNEVISG 531
           +P+S    RVL      F+++I+  +T+N  AF +  +   V+SG
Sbjct: 90  TPRS-FSARVLGMVWAGFAMIIVASYTANLAAFLVLDRPKAVVSG 133


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,907,941
Number of Sequences: 59808
Number of extensions: 282436
Number of successful extensions: 525
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 505
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 523
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2107953584
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)