Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc9p19
         (690 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       35   7e-04
AY600514-1|AAT11862.1|  242|Tribolium castaneum iroquois-like pr...    24   1.3  
AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment h...    21   7.2  
EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock prote...    21   9.5  

>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 34.7 bits (76), Expect = 7e-04
 Identities = 37/158 (23%), Positives = 66/158 (41%), Gaps = 5/158 (3%)
 Frame = +1

Query: 67  WVFGFKESCHILLKQPLCNISCNNIMTSQALASLTATYTDSEGEEDMEDQTPEKEEPKEA 246
           W FG  +   I+ ++P+     ++ +TS +    ++  +D+  +     Q+P+ + P   
Sbjct: 35  WQFGVSQ---IVKREPMDEDKNDSGVTSGSDFHSSSPSSDTSQDLQHSYQSPQTQ-PARF 90

Query: 247 HSVPTSPRKVEESNK---PASAP-VSPKKSLVSY-VDDTIVSDEEPTSPVNENEDDMRRL 411
           +S P  P      N    P S P VSPK       ++ T+     P    ++N+D +RRL
Sbjct: 91  YSTPIVPHFAYNHNPLTPPNSEPLVSPKSEKEEKDMETTLTPCASPNRKPDDNQDHLRRL 150

Query: 412 SMETDTDEAVQRSDPDDSEDGITIPPEPSGKCPKELQE 525
            M  +          + S D      E SGK   + +E
Sbjct: 151 EMSLEKSGLFSSKTSEHSVD------ELSGKSDNDAEE 182


>AY600514-1|AAT11862.1|  242|Tribolium castaneum iroquois-like
           protein protein.
          Length = 242

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = +1

Query: 376 PVNENEDDMRRLSMETDTDEAVQRSDPDDSEDGITIPPEPSGK 504
           P N+ +DD   L  ++D  E  +    DD++    I  E +GK
Sbjct: 152 PKNKTDDDDDALVSDSDDREKDEEDKRDDTDMHGRIKSERNGK 194



 Score = 22.2 bits (45), Expect = 4.1
 Identities = 16/68 (23%), Positives = 29/68 (42%)
 Frame = +1

Query: 268 RKVEESNKPASAPVSPKKSLVSYVDDTIVSDEEPTSPVNENEDDMRRLSMETDTDEAVQR 447
           R++++ NK    P    K+     DD +VSD +      E++ D   +     ++   + 
Sbjct: 140 RRLKKENKMTWEP----KNKTDDDDDALVSDSDDREKDEEDKRDDTDMHGRIKSERNGKD 195

Query: 448 SDPDDSED 471
            D DD  D
Sbjct: 196 LDDDDMND 203


>AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment
           homeodomain protein protein.
          Length = 232

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +1

Query: 409 LSMETDTDEAVQRSDPDDSEDGITI 483
           LS + D +   + SD DD ++ IT+
Sbjct: 20  LSKKEDEEVEHRLSDRDDDDENITV 44


>EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock protein
           90 protein.
          Length = 721

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = +1

Query: 208 EDQTPEKEEPKEAHSVPTSPRKVEESNK 291
           ED+  +KE+ K+  ++     + EE NK
Sbjct: 254 EDEDTKKEDKKKKKTIKEKYTEDEELNK 281


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 154,380
Number of Sequences: 336
Number of extensions: 3303
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18114270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)