Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc9p19
         (690 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    25   0.90 
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    23   2.1  
AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    23   2.1  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   4.8  

>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
            receptor protein.
          Length = 1040

 Score = 24.6 bits (51), Expect = 0.90
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +1

Query: 583  IQDKKNFRNPSIYEKLIQFCDINELDTN 666
            ++D+KN + PS+  +  Q    N+ DTN
Sbjct: 976  VKDQKNGKPPSVVSRSTQTSANNDKDTN 1003


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 9/33 (27%), Positives = 18/33 (54%)
 Frame = +1

Query: 70  VFGFKESCHILLKQPLCNISCNNIMTSQALASL 168
           +FG   +C +++K P    + N  + S A++ L
Sbjct: 55  IFGNITTCTVIIKNPAMQTATNYYLFSLAISDL 87


>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 5/54 (9%)
 Frame = +1

Query: 106 KQPLCNISCNNIMTS-QALASLTATY----TDSEGEEDMEDQTPEKEEPKEAHS 252
           K+P+CNI C  + +S  +L +  + Y    + +E +    +Q  E+E  +  HS
Sbjct: 31  KEPICNI-CKRVYSSLNSLRNHKSIYHRQHSKNEQQRKEMEQMREREREQREHS 83


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 12/51 (23%), Positives = 21/51 (41%)
 Frame = -2

Query: 593  LSCMILFMSSPSVNMRL*NFAIDSCSSLGHFPDGSGGIVMPSSESSGSDRC 441
            L C+ + + +P V  ++    + S   L   P+GS  I       +G   C
Sbjct: 1296 LPCLAVGVPAPEVTWKVRGAVLQSSDRLRQLPEGSLFIKEVDRTDAGEYSC 1346


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,246
Number of Sequences: 438
Number of extensions: 3575
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21073995
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)