Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc9p07
         (979 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L36067-1|AAA29362.1|  229|Anopheles gambiae polyubiquitin protein.    401   e-113

>L36067-1|AAA29362.1|  229|Anopheles gambiae polyubiquitin protein.
          Length = 229

 Score =  401 bits (987), Expect = e-113
 Identities = 199/202 (98%), Positives = 199/202 (98%)
 Frame = +1

Query: 91  MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 270
           MQIFVKTLTGKTITLEVE SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 271 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLI 450
           IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE SDTIENVKAKIQDKEGIPPDQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 120

Query: 451 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEASDTIENVKA 630
           FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE SDTIENVKA
Sbjct: 121 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 180

Query: 631 KIQDKEGIPPDQQRLIFAGKQL 696
           KIQDKEGIPPDQQRLIFAGKQL
Sbjct: 181 KIQDKEGIPPDQQRLIFAGKQL 202



 Score =  304 bits (746), Expect = 3e-84
 Identities = 150/152 (98%), Positives = 150/152 (98%)
 Frame = +1

Query: 91  MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 270
           MQIFVKTLTGKTITLEVE SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 77  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 136

Query: 271 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLI 450
           IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE SDTIENVKAKIQDKEGIPPDQQRLI
Sbjct: 137 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 196

Query: 451 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 546
           FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 197 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 228



 Score = 56.8 bits (131), Expect = 9e-10
 Identities = 32/52 (61%), Positives = 36/52 (69%), Gaps = 1/52 (1%)
 Frame = +3

Query: 756 VLRLKGGMPIFVKTLTGKTIXXEVEASDPLXKXKAXIPGQXRE-FPXDHQRI 908
           VLRL+GGM IFVKTLTGKTI  EVE SD +   KA I  Q +E  P D QR+
Sbjct: 70  VLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKI--QDKEGIPPDQQRL 119



 Score = 56.8 bits (131), Expect = 9e-10
 Identities = 32/52 (61%), Positives = 36/52 (69%), Gaps = 1/52 (1%)
 Frame = +3

Query: 756 VLRLKGGMPIFVKTLTGKTIXXEVEASDPLXKXKAXIPGQXRE-FPXDHQRI 908
           VLRL+GGM IFVKTLTGKTI  EVE SD +   KA I  Q +E  P D QR+
Sbjct: 146 VLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKI--QDKEGIPPDQQRL 195



 Score = 44.4 bits (100), Expect = 5e-06
 Identities = 26/45 (57%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
 Frame = +3

Query: 777 MPIFVKTLTGKTIXXEVEASDPLXKXKAXIPGQXRE-FPXDHQRI 908
           M IFVKTLTGKTI  EVE SD +   KA I  Q +E  P D QR+
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKI--QDKEGIPPDQQRL 43



 Score = 42.7 bits (96), Expect = 2e-05
 Identities = 19/20 (95%), Positives = 19/20 (95%)
 Frame = +2

Query: 695 LXDGRTLSDYNIQKESTLHL 754
           L DGRTLSDYNIQKESTLHL
Sbjct: 50  LEDGRTLSDYNIQKESTLHL 69



 Score = 42.7 bits (96), Expect = 2e-05
 Identities = 19/20 (95%), Positives = 19/20 (95%)
 Frame = +2

Query: 695 LXDGRTLSDYNIQKESTLHL 754
           L DGRTLSDYNIQKESTLHL
Sbjct: 126 LEDGRTLSDYNIQKESTLHL 145



 Score = 42.7 bits (96), Expect = 2e-05
 Identities = 19/20 (95%), Positives = 19/20 (95%)
 Frame = +2

Query: 695 LXDGRTLSDYNIQKESTLHL 754
           L DGRTLSDYNIQKESTLHL
Sbjct: 202 LEDGRTLSDYNIQKESTLHL 221



 Score = 29.5 bits (63), Expect = 0.16
 Identities = 15/30 (50%), Positives = 15/30 (50%)
 Frame = +1

Query: 889 PXTTSGLIFXGKTAXXGAYXSDYNIXKXST 978
           P     LIF GK    G   SDYNI K ST
Sbjct: 37  PPDQQRLIFAGKQLEDGRTLSDYNIQKEST 66



 Score = 29.5 bits (63), Expect = 0.16
 Identities = 15/30 (50%), Positives = 15/30 (50%)
 Frame = +1

Query: 889 PXTTSGLIFXGKTAXXGAYXSDYNIXKXST 978
           P     LIF GK    G   SDYNI K ST
Sbjct: 113 PPDQQRLIFAGKQLEDGRTLSDYNIQKEST 142



 Score = 29.5 bits (63), Expect = 0.16
 Identities = 15/30 (50%), Positives = 15/30 (50%)
 Frame = +1

Query: 889 PXTTSGLIFXGKTAXXGAYXSDYNIXKXST 978
           P     LIF GK    G   SDYNI K ST
Sbjct: 189 PPDQQRLIFAGKQLEDGRTLSDYNIQKEST 218


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 921,448
Number of Sequences: 2352
Number of extensions: 18437
Number of successful extensions: 35
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29
length of database: 563,979
effective HSP length: 65
effective length of database: 411,099
effective search space used: 106885740
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)