Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc9o24
         (145 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25B8.01 |dap1|SPAC26H5.15|cytochrome P450 regulator Dap1|Sch...    24   3.1  
SPAC23H4.15 |||ribosome biogenesis protein Tsr1 |Schizosaccharom...    23   4.2  

>SPAC25B8.01 |dap1|SPAC26H5.15|cytochrome P450 regulator
          Dap1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 166

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 11/28 (39%), Positives = 18/28 (64%), Gaps = 3/28 (10%)
 Frame = +3

Query: 3  ATFVIVFIVILFLYCMV---RNRNSRQY 77
          A+  +VFIV LFLY ++   R +N + +
Sbjct: 2  ASTQVVFIVTLFLYLLITRWRRKNEKSF 29


>SPAC23H4.15 |||ribosome biogenesis protein Tsr1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 783

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = -1

Query: 70  LLLRFLTIQYKNKITINTIT 11
           LL+ +  +QY+NK+T++  T
Sbjct: 569 LLVLYSLLQYENKLTVSQFT 588


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 287,749
Number of Sequences: 5004
Number of extensions: 1777
Number of successful extensions: 6
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 2,362,478
effective HSP length: 28
effective length of database: 2,222,366
effective search space used: 42224954
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)