Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc9o24
         (145 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88183-2|AAM69080.1| 1273|Caenorhabditis elegans Sensory axon gu...    25   5.5  
U88183-1|AAB52657.2| 1269|Caenorhabditis elegans Sensory axon gu...    25   5.5  
AF041053-1|AAC38848.1| 1273|Caenorhabditis elegans SAX-3 protein.      25   5.5  
Z49130-7|CAA88972.2|  316|Caenorhabditis elegans Hypothetical pr...    25   7.3  

>U88183-2|AAM69080.1| 1273|Caenorhabditis elegans Sensory axon
           guidance protein 3,isoform b protein.
          Length = 1273

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 11/20 (55%), Positives = 15/20 (75%), Gaps = 1/20 (5%)
 Frame = +3

Query: 12  VIVFIVILFLYCMVRN-RNS 68
           +I+F+VI+  YC  RN RNS
Sbjct: 883 LIIFVVIIIAYCYWRNSRNS 902


>U88183-1|AAB52657.2| 1269|Caenorhabditis elegans Sensory axon
           guidance protein 3,isoform a protein.
          Length = 1269

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 11/20 (55%), Positives = 15/20 (75%), Gaps = 1/20 (5%)
 Frame = +3

Query: 12  VIVFIVILFLYCMVRN-RNS 68
           +I+F+VI+  YC  RN RNS
Sbjct: 883 LIIFVVIIIAYCYWRNSRNS 902


>AF041053-1|AAC38848.1| 1273|Caenorhabditis elegans SAX-3 protein.
          Length = 1273

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 11/20 (55%), Positives = 15/20 (75%), Gaps = 1/20 (5%)
 Frame = +3

Query: 12  VIVFIVILFLYCMVRN-RNS 68
           +I+F+VI+  YC  RN RNS
Sbjct: 883 LIIFVVIIIAYCYWRNSRNS 902


>Z49130-7|CAA88972.2|  316|Caenorhabditis elegans Hypothetical
           protein T06D8.9 protein.
          Length = 316

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +3

Query: 3   ATFVIVFIVILFLYCMVRNRN 65
           ATFV+V  +   +Y M  NRN
Sbjct: 153 ATFVVVAFIAYIIYAMWTNRN 173


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,613,582
Number of Sequences: 27780
Number of extensions: 10886
Number of successful extensions: 38
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38
length of database: 12,740,198
effective HSP length: 28
effective length of database: 11,962,358
effective search space used: 227284802
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)