Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc9o21
         (703 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1...    40   5e-04
SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    36   0.004
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc...    34   0.023
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    30   0.37 
SPBC26H8.02c |sec9||SNAP-25 homologue, t-SNARE component Sec9|Sc...    29   0.85 
SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase |Schizosa...    27   2.0  
SPAC1039.06 |||alanine racemase |Schizosaccharomyces pombe|chr 1...    27   2.6  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    27   2.6  
SPAC2C4.14c |ppk11||PAK-related kinase Ppk11|Schizosaccharomyces...    27   3.4  
SPBC1604.20c |tea2|klp4|kinesin-like protein Tea2|Schizosaccharo...    27   3.4  
SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual        26   4.5  
SPBC887.10 |mcs4||two-component response regulator |Schizosaccha...    26   4.5  
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22...    26   6.0  

>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 857

 Score = 39.5 bits (88), Expect = 5e-04
 Identities = 18/49 (36%), Positives = 26/49 (53%)
 Frame = -2

Query: 150 PMGPGHPGNPSIPALPCSPLSGNSPFRPGKPRGPWSPLSPMKPGRPSLP 4
           P+ P  P  PS+P  P +P+   +P  P  P  P +P  P  P RP++P
Sbjct: 578 PVAPVAPEVPSVPQPPVAPVVPEAPSVPQPPVAPVAPEVPSVPQRPAVP 626



 Score = 38.7 bits (86), Expect = 8e-04
 Identities = 18/49 (36%), Positives = 24/49 (48%)
 Frame = -2

Query: 150 PMGPGHPGNPSIPALPCSPLSGNSPFRPGKPRGPWSPLSPMKPGRPSLP 4
           P+ P  P  PS+P  P  P+   +P  P  P  P  P  P  P RP++P
Sbjct: 608 PVAPVAPEVPSVPQRPAVPVVPEAPSVPQPPAAPVVPEVPSVPQRPAVP 656



 Score = 38.3 bits (85), Expect = 0.001
 Identities = 17/49 (34%), Positives = 25/49 (51%)
 Frame = -2

Query: 150 PMGPGHPGNPSIPALPCSPLSGNSPFRPGKPRGPWSPLSPMKPGRPSLP 4
           P  P  P  PS+   P +P++   P  P +P  P  P +P  P RP++P
Sbjct: 518 PAAPVVPEAPSVHQPPAAPVAPEVPSAPQRPAAPVVPEAPSVPQRPAVP 566



 Score = 31.9 bits (69), Expect = 0.091
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = -2

Query: 123 PSIPALPCSPLSGNSPFRPGKPRGPWSPLSPMKPGRPSLP 4
           PS+P  P +P+   +P     P  P +P  P  P RP+ P
Sbjct: 512 PSVPQPPAAPVVPEAPSVHQPPAAPVAPEVPSAPQRPAAP 551


>SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 636

 Score = 36.3 bits (80), Expect = 0.004
 Identities = 15/48 (31%), Positives = 22/48 (45%)
 Frame = -2

Query: 150 PMGPGHPGNPSIPALPCSPLSGNSPFRPGKPRGPWSPLSPMKPGRPSL 7
           P  P  P    +PA P  P+     ++P  P  P   + P +P +PSL
Sbjct: 404 PSSPVQPVQNGVPAPPMQPVQSTQYYQPSSPVQPVQNVKPAQPAQPSL 451


>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 587

 Score = 33.9 bits (74), Expect = 0.023
 Identities = 22/83 (26%), Positives = 30/83 (36%), Gaps = 3/83 (3%)
 Frame = +2

Query: 5   GNEGLPGFIGERGDQGPRGL---PGRNGEFPERGEQGKAGIDGLPGWPGPMGQKGAPGEY 175
           G  G+P     +    P G+   PG    FP     G   +  +PG PG     GAPG Y
Sbjct: 510 GAPGMPNLNMSQPPMVPPGMALPPGMPAPFP-----GYPAVPAMPGIPGATAPPGAPGSY 564

Query: 176 GVDGPEGTPGQPGLTYEGAKGDR 244
                      PG++      +R
Sbjct: 565 NTSESSNLNAPPGVSMPNGYSNR 587



 Score = 33.1 bits (72), Expect = 0.040
 Identities = 15/44 (34%), Positives = 19/44 (43%)
 Frame = -2

Query: 660 PGIPATPSRPSNPGNPTSPGCPGKISDGSRVSPLSPSIPCRPGG 529
           PG PA P+ P  PG    PG PG  +     +  +P     P G
Sbjct: 540 PGYPAVPAMPGIPGATAPPGAPGSYNTSESSNLNAPPGVSMPNG 583



 Score = 25.8 bits (54), Expect = 6.0
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = +2

Query: 593 PGQPGDVGLPGFDGRDGVAGIPGSF 667
           PG P    +PG  G     G PGS+
Sbjct: 540 PGYPAVPAMPGIPGATAPPGAPGSY 564



 Score = 25.4 bits (53), Expect = 7.9
 Identities = 14/45 (31%), Positives = 19/45 (42%)
 Frame = -2

Query: 678 PFRPKDPGIPATPSRPSNPGNPTSPGCPGKISDGSRVSPLSPSIP 544
           PF P  P +PA P  P     P +PG        +  +P   S+P
Sbjct: 538 PF-PGYPAVPAMPGIPGATAPPGAPGSYNTSESSNLNAPPGVSMP 581


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 29.9 bits (64), Expect = 0.37
 Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
 Frame = -2

Query: 150  PMGPGHPGNPS--IPALPCSPLSGNSPFRPGKPRGPWSPLSP 31
            P+     G PS  +PA+P +P +  +PF   +P  P SPL P
Sbjct: 1601 PLAMNAAGQPSLAVPAVPSAPSNHFNPFAKMQPPAP-SPLQP 1641



 Score = 27.5 bits (58), Expect = 2.0
 Identities = 13/49 (26%), Positives = 21/49 (42%)
 Frame = -2

Query: 150  PMGPGHPGNPSIPALPCSPLSGNSPFRPGKPRGPWSPLSPMKPGRPSLP 4
            P  PG P N +   +P +P+   +P +P  P    +  +P     P  P
Sbjct: 1433 PTNPGAPSNHAPQVVPPAPMHAVAPVQPKAPGMVTNAPAPSSAPAPPAP 1481



 Score = 26.2 bits (55), Expect = 4.5
 Identities = 13/40 (32%), Positives = 18/40 (45%)
 Frame = -2

Query: 651  PATPSRPSNPGNPTSPGCPGKISDGSRVSPLSPSIPCRPG 532
            P+ P R  + G+ +S      I D +   PL  S P  PG
Sbjct: 1398 PSAPERRDSFGSVSSGSNVSSIEDETSTMPLKASQPTNPG 1437


>SPBC26H8.02c |sec9||SNAP-25 homologue, t-SNARE component
           Sec9|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 419

 Score = 28.7 bits (61), Expect = 0.85
 Identities = 17/62 (27%), Positives = 21/62 (33%), Gaps = 3/62 (4%)
 Frame = +2

Query: 404 YNGLKGEKGTIGETGRIGIYGEQ---GLVGVKGETGDEGEAGFIGPPGLQGIEGDKGDTL 574
           YN       T G +   G YG     G  G     G  G +   G  G     GD G ++
Sbjct: 48  YNDNNNSNSTYGSSNNYGNYGSSNNYGSYGASNTYGSNGSSNNYGNYGATNSNGDAGYSI 107

Query: 575 LP 580
            P
Sbjct: 108 TP 109


>SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1076

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +2

Query: 413 LKGEKGTIGETGRIGIYGEQGLVGVKGETGDEG 511
           +K  +GT+ +TG  G+ G +G V ++ +  D G
Sbjct: 660 IKNVEGTVKKTGLGGVSGNKGAVAIRFDYEDTG 692


>SPAC1039.06 |||alanine racemase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 415

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = +2

Query: 428 GTIGETGRIGIYGEQGLVGVKGETGDEGEAGFIGPPGLQGIEGDK 562
           G  GE G + +    G++ +  ET  EG+ G +  PG +    D+
Sbjct: 313 GRNGEPGEVLV--NAGVIAMSRETSPEGDFGIVITPGFESFYVDR 355


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 18/41 (43%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
 Frame = -2

Query: 660 PGIPATPSRPSNPGNPTSPGCPGKISD--GSRVSPLSPSIP 544
           P  PATPS+P  P    S    G  S    S  SP SPS P
Sbjct: 273 PPPPATPSQPPRPPTNASTRSTGTSSSMAHSYDSPPSPSSP 313


>SPAC2C4.14c |ppk11||PAK-related kinase Ppk11|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 312

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
 Frame = +3

Query: 30  LEKEVTKDLVVYLVETVNFLKEANKV--KQELTDYQDGLVPWVKKE 161
           ++ + TKD +  L + +NFL + N V   +    + DG   W+  E
Sbjct: 37  VDLDATKDQIETLTQEINFLIDLNSVHITKYYASFVDGFRLWITME 82


>SPBC1604.20c |tea2|klp4|kinesin-like protein
           Tea2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 628

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 12/21 (57%), Positives = 12/21 (57%)
 Frame = -2

Query: 144 GPGHPGNPSIPALPCSPLSGN 82
           GP   G  SIP  P SPLS N
Sbjct: 28  GPSQSGTGSIPYSPTSPLSRN 48


>SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1279

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = +3

Query: 30   LEKEVTKDLVVYLVETVNFLKEANKVKQELTDYQDGLVPW 149
            L K++  DL V+ V+T   +K     +  L D++DG+ PW
Sbjct: 1129 LMKKLRSDLKVF-VDTPE-IKPVQPTEVVLEDHEDGVFPW 1166


>SPBC887.10 |mcs4||two-component response regulator
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 522

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = +1

Query: 598 TTW*CWIARI*WTGWC 645
           T W C  A I W GWC
Sbjct: 502 TEWGCMQALIDWNGWC 517


>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
           Snf22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1680

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 5/56 (8%)
 Frame = +2

Query: 101 QGKAGIDGLPGWP---GPMGQKGAPGEYGVDGPE--GTPGQPGLTYEGAKGDRGMP 253
           +GKAG+  LPG P   GP       G  G++ P    +   P +     + D  +P
Sbjct: 95  EGKAGMQTLPGRPASNGPTPPNPGNGNVGLNNPSYMNSQASPNIMNAPLQRDTSVP 150


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,843,047
Number of Sequences: 5004
Number of extensions: 59652
Number of successful extensions: 206
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 204
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)