Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc9o02
         (705 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.20c |||RNA methyltransferase Nop2 |Schizosaccharomyces p...    29   0.65 
SPAC23C11.03 |||U3 snoRNP-associated protein Mpp1 |Schizosacchar...    28   1.5  
SPAC23C4.17 |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual          27   3.5  
SPBC409.07c |wis1|spc2, smf2|MAP kinase kinase Wis1|Schizosaccha...    26   4.6  
SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|...    26   4.6  
SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc...    26   4.6  
SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ...    26   6.0  
SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|c...    26   6.0  

>SPBP8B7.20c |||RNA methyltransferase Nop2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 608

 Score = 29.1 bits (62), Expect = 0.65
 Identities = 34/131 (25%), Positives = 54/131 (41%), Gaps = 11/131 (8%)
 Frame = +1

Query: 247 EKKKDNMD----EETTTVITMESEDEPDTGVTYFVDEEGRYYYQPTGNNQDLVPLQTEAT 414
           E +KD +D    EE  T+  +E ++EP T    F+D+E +   +  G  +D V    E  
Sbjct: 61  ENEKDLIDADEFEEAETLSDLEHDEEPQTFADEFIDDEAK---ECEGEEEDSVFDSDEEH 117

Query: 415 ET------TNKDEEIAGLEPTKTSCRS*D-RTHVKARGGE*SV*CGAHLSHHPPPRDAGP 573
           E        + DEE   L   +   R  D    ++ +  E  +    H + HP      P
Sbjct: 118 EVKPMFSDDSGDEEDLELANMEAMSRKLDEEAELEEKEAEEEL----HTNIHPEAPTVLP 173

Query: 574 AIVGATTTSPL 606
            I G T + P+
Sbjct: 174 PIDGFTDSQPI 184


>SPAC23C11.03 |||U3 snoRNP-associated protein Mpp1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 598

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 10/34 (29%), Positives = 20/34 (58%)
 Frame = +1

Query: 289 ITMESEDEPDTGVTYFVDEEGRYYYQPTGNNQDL 390
           + +E+EDE +  +T F DE+    +Q   +N ++
Sbjct: 73  VDVENEDEEEDSITSFQDEDDETSHQELSDNSEM 106


>SPAC23C4.17 |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 674

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 14/49 (28%), Positives = 27/49 (55%)
 Frame = +1

Query: 223 VMPPGNRKEKKKDNMDEETTTVITMESEDEPDTGVTYFVDEEGRYYYQP 369
           ++PP N++++ +  +DE + + +T        +G +YF DEE   Y  P
Sbjct: 449 ILPPENKRQRTEKGVDEASNSTLT-------KSGNSYF-DEEPFVYINP 489


>SPBC409.07c |wis1|spc2, smf2|MAP kinase kinase
           Wis1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 605

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = +2

Query: 536 ISPITLPLGTPGQRSSAPRPPALSVGRLSEA 628
           IS  T P+   GQR S P P +   GRLS +
Sbjct: 167 ISSPTTPIVGMGQRGSYPLPNSQLAGRLSNS 197


>SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 310

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 11/58 (18%), Positives = 26/58 (44%)
 Frame = +2

Query: 428 KTRKSPDSNRLKPPVAHETELM*RQGEESEAFSAEHISPITLPLGTPGQRSSAPRPPA 601
           +TR    ++R  P +  +     ++          ++ P++ P  +P +  S+P PP+
Sbjct: 226 ETRPLAQASRATPDIKEQHAKKPKRKHTRSTVPTSNVEPVSQPQPSPDKIVSSPNPPS 283


>SPBC18H10.04c |sce3|tif48|translation initiation factor
           eIF4B|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 388

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 13/35 (37%), Positives = 15/35 (42%)
 Frame = +1

Query: 247 EKKKDNMDEETTTVITMESEDEPDTGVTYFVDEEG 351
           EKK    D E     T  +ED P T      +EEG
Sbjct: 344 EKKSSETDSEVAATKTPATEDAPATNAGEAEEEEG 378


>SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1502

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = +1

Query: 271  EETTTVITMESEDEPDTGVTYFVDEEGRYYY-QPTGNNQD 387
            E   +V ++ S D+P TG+   ++   R  Y QP GN  +
Sbjct: 921  ELEVSVASLSSNDQPSTGLYPILNMFSRLQYAQPYGNENE 960


>SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 807

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +2

Query: 419 PQIKTRKSPDSNRLKPPVAHETEL 490
           P+ K RK P     +PPV H T L
Sbjct: 423 PESKRRKCPKKFVARPPVPHPTSL 446


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,918,348
Number of Sequences: 5004
Number of extensions: 60490
Number of successful extensions: 189
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)