Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc9n12
         (278 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non ca...    28   0.28 
SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein L10|Sch...    24   4.6  
SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein L10|Sc...    24   4.6  
SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual      23   6.1  
SPCC126.05c |mrpl17||mitochondrial ribosomal protein subunit L17...    23   8.0  

>SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non
           catalytic subunit Arm1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 811

 Score = 27.9 bits (59), Expect = 0.28
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = -1

Query: 203 LIEQTICLLKHGITYDNASLHL 138
           LI   ICLL+ GITY   + HL
Sbjct: 417 LIFDAICLLEKGITYSQHNFHL 438


>SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein
           L10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 221

 Score = 23.8 bits (49), Expect = 4.6
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +1

Query: 106 CIYLVDN*YYIK*SEALSYVMPCLRRHIV 192
           CI+LV N Y    SEAL     C  +++V
Sbjct: 49  CIHLVSNEYEQITSEALEAARICANKYLV 77


>SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein
           L10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 221

 Score = 23.8 bits (49), Expect = 4.6
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +1

Query: 106 CIYLVDN*YYIK*SEALSYVMPCLRRHIV 192
           CI+LV N Y    SEAL     C  +++V
Sbjct: 49  CIHLVSNEYEQITSEALEAARICANKYLV 77


>SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1489

 Score = 23.4 bits (48), Expect = 6.1
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -1

Query: 59  IKGYLAKNRF*RKQNIVH 6
           I+GYL++N+F RK    H
Sbjct: 666 IRGYLSRNKFSRKLQNFH 683


>SPCC126.05c |mrpl17||mitochondrial ribosomal protein subunit
           L17|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 268

 Score = 23.0 bits (47), Expect = 8.0
 Identities = 7/25 (28%), Positives = 15/25 (60%)
 Frame = -3

Query: 231 LYDFIKAIYINRTNNMSP*TWHNIR 157
           +YD++   Y    N +SP +W +++
Sbjct: 237 VYDWVWCTYDELKNKLSPSSWDSVK 261


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,066,092
Number of Sequences: 5004
Number of extensions: 17463
Number of successful extensions: 30
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 61566900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)