Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc9n12
         (278 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X74570-1|CAA52662.1|  329|Homo sapiens gal beta (1-3/1-4) GlcNAc...    29   3.5  
L23767-1|AAA16460.1|  332|Homo sapiens a2,3 sialyltransferse pro...    29   3.5  
CR456858-1|CAG33139.1|  329|Homo sapiens rase); complete cds, in...    29   3.5  
BC010645-1|AAH10645.1|  333|Homo sapiens ST3GAL4 protein protein.      29   3.5  
AY040826-1|AAK93790.1|  339|Homo sapiens alpha 2,3-sialyltransfe...    29   3.5  
AF525084-1|AAM81378.1|  338|Homo sapiens alpha-2,3-sialyltransfe...    29   3.5  
AF516604-1|AAM66433.1|  328|Homo sapiens alpha 2,3-sialyltransfe...    29   3.5  
AF516603-1|AAM66432.1|  318|Homo sapiens alpha 2,3 sialyltransfe...    29   3.5  
AF516602-1|AAM66431.1|  328|Homo sapiens alpha 2,3-sialyltransfe...    29   3.5  
AF035249-1|AAC14162.1|  267|Homo sapiens CMP-N-acetylneuraminate...    29   3.5  

>X74570-1|CAA52662.1|  329|Homo sapiens gal beta (1-3/1-4) GlcNAc
           alpha-2,3  sialyltransferase protein.
          Length = 329

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = -2

Query: 118 LNKYKIVYRLNNIPVLG 68
           +NKY +V RLNN PV G
Sbjct: 134 INKYDVVIRLNNAPVAG 150


>L23767-1|AAA16460.1|  332|Homo sapiens a2,3 sialyltransferse
           protein.
          Length = 332

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = -2

Query: 118 LNKYKIVYRLNNIPVLG 68
           +NKY +V RLNN PV G
Sbjct: 137 INKYDVVIRLNNAPVAG 153


>CR456858-1|CAG33139.1|  329|Homo sapiens rase); complete cds, incl.
           stopcodon.   protein.
          Length = 329

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = -2

Query: 118 LNKYKIVYRLNNIPVLG 68
           +NKY +V RLNN PV G
Sbjct: 134 INKYDVVIRLNNAPVAG 150


>BC010645-1|AAH10645.1|  333|Homo sapiens ST3GAL4 protein protein.
          Length = 333

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = -2

Query: 118 LNKYKIVYRLNNIPVLG 68
           +NKY +V RLNN PV G
Sbjct: 138 INKYDVVIRLNNAPVAG 154


>AY040826-1|AAK93790.1|  339|Homo sapiens alpha
           2,3-sialyltransferase IV type B+18 protein.
          Length = 339

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = -2

Query: 118 LNKYKIVYRLNNIPVLG 68
           +NKY +V RLNN PV G
Sbjct: 144 INKYDVVIRLNNAPVAG 160


>AF525084-1|AAM81378.1|  338|Homo sapiens
           alpha-2,3-sialyltransferase IV type A1+18 protein.
          Length = 338

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = -2

Query: 118 LNKYKIVYRLNNIPVLG 68
           +NKY +V RLNN PV G
Sbjct: 143 INKYDVVIRLNNAPVAG 159


>AF516604-1|AAM66433.1|  328|Homo sapiens alpha
           2,3-sialyltransferase IV type A1-12 protein.
          Length = 328

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = -2

Query: 118 LNKYKIVYRLNNIPVLG 68
           +NKY +V RLNN PV G
Sbjct: 133 INKYDVVIRLNNAPVAG 149


>AF516603-1|AAM66432.1|  318|Homo sapiens alpha 2,3
           sialyltransferase IV type A2-12 protein.
          Length = 318

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = -2

Query: 118 LNKYKIVYRLNNIPVLG 68
           +NKY +V RLNN PV G
Sbjct: 123 INKYDVVIRLNNAPVAG 139


>AF516602-1|AAM66431.1|  328|Homo sapiens alpha
           2,3-sialyltransferase IV type A2+18 protein.
          Length = 328

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = -2

Query: 118 LNKYKIVYRLNNIPVLG 68
           +NKY +V RLNN PV G
Sbjct: 133 INKYDVVIRLNNAPVAG 149


>AF035249-1|AAC14162.1|  267|Homo sapiens
           CMP-N-acetylneuraminate-beta-galactosamide-
           alpha-2,3-sialyltransferase protein.
          Length = 267

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = -2

Query: 118 LNKYKIVYRLNNIPVLG 68
           +NKY +V RLNN PV G
Sbjct: 80  INKYDVVIRLNNAPVAG 96


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 34,187,511
Number of Sequences: 237096
Number of extensions: 554544
Number of successful extensions: 592
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 592
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 592
length of database: 76,859,062
effective HSP length: 70
effective length of database: 60,262,342
effective search space used: 1325771524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)