Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc9n12
         (278 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z99286-3|CAH60794.1|  320|Caenorhabditis elegans Hypothetical pr...    26   3.5  
Z99282-1|CAB16532.1| 1037|Caenorhabditis elegans Hypothetical pr...    25   6.1  
U80953-3|AAB52554.1|  350|Caenorhabditis elegans Abnormal dauer ...    25   6.1  
U72884-1|AAC47389.1|  350|Caenorhabditis elegans DAF-7 protein.        25   6.1  
U72883-1|AAC47390.1|  350|Caenorhabditis elegans dauer larva dev...    25   6.1  
U40942-4|AAC47069.2|  486|Caenorhabditis elegans Hypothetical pr...    25   6.1  
AF039053-5|AAC25875.2|  293|Caenorhabditis elegans Serpentine re...    25   6.1  

>Z99286-3|CAH60794.1|  320|Caenorhabditis elegans Hypothetical
           protein Y7A9C.9 protein.
          Length = 320

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = +1

Query: 1   KKCTIFCFR*NLFLAKYPFIVCFPRPEYC 87
           K+ TI C   +    K P I C P P YC
Sbjct: 157 KEITIICIVGSQMEIKRPNIRCIPAPGYC 185


>Z99282-1|CAB16532.1| 1037|Caenorhabditis elegans Hypothetical
           protein Y70C5A.2 protein.
          Length = 1037

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 12/44 (27%), Positives = 22/44 (50%)
 Frame = -3

Query: 273 FFIVTHVYNHSQMQLYDFIKAIYINRTNNMSP*TWHNIRQCFTS 142
           FF+++ +Y   +  + D  + I +   NN+   T   IR C+ S
Sbjct: 488 FFVISSIYKQGKKSIIDVQEIINLEILNNI---TGLRIRDCYMS 528


>U80953-3|AAB52554.1|  350|Caenorhabditis elegans Abnormal dauer
           formation protein 7 protein.
          Length = 350

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -3

Query: 228 YDFIKAIYINRTNNMS 181
           YD+IK IY+NR   +S
Sbjct: 320 YDYIKLIYVNRDGRVS 335


>U72884-1|AAC47389.1|  350|Caenorhabditis elegans DAF-7 protein.
          Length = 350

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -3

Query: 228 YDFIKAIYINRTNNMS 181
           YD+IK IY+NR   +S
Sbjct: 320 YDYIKLIYVNRDGRVS 335


>U72883-1|AAC47390.1|  350|Caenorhabditis elegans dauer larva
           development regulatorygrowth factor protein.
          Length = 350

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -3

Query: 228 YDFIKAIYINRTNNMS 181
           YD+IK IY+NR   +S
Sbjct: 320 YDYIKLIYVNRDGRVS 335


>U40942-4|AAC47069.2|  486|Caenorhabditis elegans Hypothetical
           protein K02E10.4a protein.
          Length = 486

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = +1

Query: 166 MPCLRRHIVCSININCFY 219
           +P   +H++C  N NCF+
Sbjct: 113 LPGTSQHLICGANHNCFF 130


>AF039053-5|AAC25875.2|  293|Caenorhabditis elegans Serpentine
           receptor, class bc (class b-like) protein 23 protein.
          Length = 293

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -3

Query: 231 LYDFIKAIYINRTNNMSP*TWHNIRQCFTSL 139
           L+DF+  ++ N T+ +   + HNI    TSL
Sbjct: 224 LFDFLSIVFFNFTDRVETFSIHNIGPFATSL 254


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,789,829
Number of Sequences: 27780
Number of extensions: 96077
Number of successful extensions: 275
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 273
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 275
length of database: 12,740,198
effective HSP length: 69
effective length of database: 10,823,378
effective search space used: 248937694
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)