Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc9n05
(475 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
U15954-1|AAA67442.1| 53|Apis mellifera abaecin precursor protein. 27 0.077
Z26318-1|CAA81227.1| 544|Apis mellifera royal jelly protein RJP... 27 0.14
DQ069332-1|AAZ32217.1| 296|Apis mellifera RNA polymerase II lar... 25 0.41
AM076717-1|CAJ28210.1| 501|Apis mellifera serotonin receptor pr... 24 0.72
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 22 2.9
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 22 3.8
DQ869051-1|ABJ09598.1| 581|Apis mellifera pyrokinin-like recept... 21 5.1
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 21 5.1
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 21 5.1
AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic ac... 21 6.7
DQ855483-1|ABH88170.1| 117|Apis mellifera chemosensory protein ... 21 8.9
AJ973398-1|CAJ01445.1| 117|Apis mellifera hypothetical protein ... 21 8.9
>U15954-1|AAA67442.1| 53|Apis mellifera abaecin precursor protein.
Length = 53
Score = 27.5 bits (58), Expect = 0.077
Identities = 14/36 (38%), Positives = 17/36 (47%)
Frame = -2
Query: 207 MNICIFTLLLIMTTVAVNVPLPPPMVELCNRRPIPT 100
M + IF L+ T A +P P V RRP PT
Sbjct: 1 MKVVIFIFALLATICAAFAYVPLPNVPQPGRRPFPT 36
>Z26318-1|CAA81227.1| 544|Apis mellifera royal jelly protein
RJP57-1 protein.
Length = 544
Score = 26.6 bits (56), Expect = 0.14
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = +1
Query: 190 KNANIHQNIDGQNHYRRNGTRRDGGR 267
+NAN +QN D QN ++NG R++ R
Sbjct: 440 QNAN-NQNADNQNANKQNGNRQNDNR 464
Score = 22.2 bits (45), Expect = 2.9
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +1
Query: 190 KNANIHQNIDGQNHYRRNGTRRDGGR 267
+N N QN + QN R+N +R+G R
Sbjct: 495 QNGN-KQNDNKQNGNRQNDNKRNGNR 519
>DQ069332-1|AAZ32217.1| 296|Apis mellifera RNA polymerase II large
subunit protein.
Length = 296
Score = 25.0 bits (52), Expect = 0.41
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = -1
Query: 277 LLEIGHRLCGFRFGGN 230
+LE+GH +CG RF GN
Sbjct: 118 MLELGHEVCG-RFYGN 132
>AM076717-1|CAJ28210.1| 501|Apis mellifera serotonin receptor
protein.
Length = 501
Score = 24.2 bits (50), Expect = 0.72
Identities = 7/13 (53%), Positives = 11/13 (84%)
Frame = +3
Query: 96 VVWVSAACCTIPP 134
+VW+ AAC ++PP
Sbjct: 164 LVWLGAACISLPP 176
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 22.2 bits (45), Expect = 2.9
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -2
Query: 207 MNICIFTLLLIMTTVAVNVPLP 142
M + IFTL I+ T+AV + P
Sbjct: 529 MCLIIFTLFTIIATIAVLLSAP 550
Score = 21.8 bits (44), Expect = 3.8
Identities = 9/29 (31%), Positives = 16/29 (55%)
Frame = +2
Query: 116 LLHNSTIGGGKGTFTATVVIISNSVKMQI 202
L++NS G GT+ VV+ +N + +
Sbjct: 111 LMYNSADEGFDGTYPTNVVVKNNGTCLYV 139
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 21.8 bits (44), Expect = 3.8
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = +2
Query: 116 LLHNSTIGGGKGTFTATVVIISN 184
L++NS G GT+ +VV+ N
Sbjct: 74 LMYNSADEGFDGTYQTSVVVTHN 96
>DQ869051-1|ABJ09598.1| 581|Apis mellifera pyrokinin-like receptor
2 protein.
Length = 581
Score = 21.4 bits (43), Expect = 5.1
Identities = 5/16 (31%), Positives = 11/16 (68%)
Frame = +3
Query: 96 VVWVSAACCTIPPSVE 143
V+W+ A C +P +++
Sbjct: 177 VIWLLALCLAVPQAIQ 192
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.4 bits (43), Expect = 5.1
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = +2
Query: 116 LLHNSTIGGGKGTFTATVVIISN 184
L++NS G GT+ VV+ N
Sbjct: 142 LMYNSADEGFDGTYQTNVVVTHN 164
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.4 bits (43), Expect = 5.1
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = +2
Query: 116 LLHNSTIGGGKGTFTATVVIISN 184
L++NS G GT+ VV+ N
Sbjct: 142 LMYNSADEGFDGTYQTNVVVTHN 164
>AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha-3 protein.
Length = 537
Score = 21.0 bits (42), Expect = 6.7
Identities = 9/28 (32%), Positives = 13/28 (46%)
Frame = +3
Query: 42 DNF*LRAWKSIAVEGK*FVVWVSAACCT 125
DN + WK +A+ +WV CT
Sbjct: 467 DNEVIEDWKFVAMVLDRLFLWVFTLACT 494
>DQ855483-1|ABH88170.1| 117|Apis mellifera chemosensory protein 2
protein.
Length = 117
Score = 20.6 bits (41), Expect = 8.9
Identities = 8/28 (28%), Positives = 18/28 (64%)
Frame = +2
Query: 176 ISNSVKMQIFIKTLTGKTITAETEPAET 259
+++++K + + L T+TAETE ++
Sbjct: 1 MASAIKALLIVCALFIYTVTAETEEGQS 28
>AJ973398-1|CAJ01445.1| 117|Apis mellifera hypothetical protein
protein.
Length = 117
Score = 20.6 bits (41), Expect = 8.9
Identities = 8/28 (28%), Positives = 18/28 (64%)
Frame = +2
Query: 176 ISNSVKMQIFIKTLTGKTITAETEPAET 259
+++++K + + L T+TAETE ++
Sbjct: 1 MASAIKALLIVCALFIYTVTAETEEGQS 28
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 140,403
Number of Sequences: 438
Number of extensions: 3138
Number of successful extensions: 14
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12805416
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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