Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc9n01
(769 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC13C5.07 |rad32|mre11|Rad32 nuclease|Schizosaccharomyces pomb... 71 1e-13
SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces po... 27 2.2
SPBC21.01 |mis17|SPBC776.19|kinetochore protein Mis17|Schizosacc... 27 3.0
SPAC1002.18 |urg3||DUF1688 family protein|Schizosaccharomyces po... 26 5.2
SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat protei... 26 5.2
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 26 5.2
SPBC31F10.16 |||ChAPs family protein|Schizosaccharomyces pombe|c... 26 6.8
SPAC3H1.01c |orp3|orc3, SPAP14E8.06c|origin recognition complex ... 26 6.8
SPAC3F10.03 |||glycine tRNA-ligase|Schizosaccharomyces pombe|chr... 26 6.8
SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein Zds1|Sch... 26 6.8
SPAC13D6.04c |btb3||BTB/POZ domain protein Btb3|Schizosaccharomy... 25 9.0
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces... 25 9.0
>SPAC13C5.07 |rad32|mre11|Rad32 nuclease|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 649
Score = 71.3 bits (167), Expect = 1e-13
Identities = 60/224 (26%), Positives = 97/224 (43%), Gaps = 8/224 (3%)
Frame = +2
Query: 5 LTPLPLQTVRPFIFKTIVLSEENIGSEDVNENEKVQEFLKNRVNEAIDEAS--------K 160
L + L+TVRPFI K I+LSE + V ++V +L ++V EAI EA+
Sbjct: 301 LEKIRLRTVRPFIMKDIILSEVSSIPPMVENKKEVLTYLISKVEEAITEANAQWYEAQGT 360
Query: 161 LKTADLRQPLLPLIRLSIFYERESQNFNRIRFGQNFNGLVANPNDLLIMXXXXXXXXXXX 340
+ + +P LPLIRL + Y Q N RF F G VAN D++
Sbjct: 361 VPVVENEKPPLPLIRLRVDYTGGYQTENPQRFSNRFVGRVANATDVVQFYLKKKYTRSKR 420
Query: 341 XXXXXXGDMTGVAAEAADVESLLRAYYEAQPKDKRLSVLSVRVITDAVRDFTLKHNEDVL 520
+ + + VESL+ Y K RL L + +AV +F K + D +
Sbjct: 421 NDGLYTSAVEDIKINSLRVESLVNEYL----KTNRLECLPEDSLGEAVVNFVEKDDRDAI 476
Query: 521 RRAFDAHKRRCIAALLESTAETEKEIAEQLEVCKRELDEADDEK 652
+ + + I L++ TE+ + +++ +L + K
Sbjct: 477 KECVETQLNKQINLLVKKRV-TEENLEQEISSIINDLPKISTTK 519
>SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 432
Score = 27.5 bits (58), Expect = 2.2
Identities = 11/24 (45%), Positives = 18/24 (75%)
Frame = +2
Query: 95 ENEKVQEFLKNRVNEAIDEASKLK 166
+NEK +E ++++V E +D A KLK
Sbjct: 48 KNEKSKEIIRSKVIEYLDRAEKLK 71
>SPBC21.01 |mis17|SPBC776.19|kinetochore protein
Mis17|Schizosaccharomyces pombe|chr 2|||Manual
Length = 441
Score = 27.1 bits (57), Expect = 3.0
Identities = 18/53 (33%), Positives = 31/53 (58%), Gaps = 3/53 (5%)
Frame = +2
Query: 59 LSEENIGSEDVNENEKVQEFLKN--RVNEAIDE-ASKLKTADLRQPLLPLIRL 208
LS+E GS+ +NE + VQ+F + + NE ++ K+K A + Q + L+ L
Sbjct: 264 LSKEAGGSKTLNELDAVQQFFQEFIKENEPLEPYVVKVKNAFVEQVSIRLLEL 316
>SPAC1002.18 |urg3||DUF1688 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 399
Score = 26.2 bits (55), Expect = 5.2
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +2
Query: 554 IAALLESTAETEKEIAEQLEVCKRELD 634
+ L + ++ EKE + LE+CKR LD
Sbjct: 77 VPRLSQLVSKWEKEGVDSLEICKRVLD 103
>SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 945
Score = 26.2 bits (55), Expect = 5.2
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = +3
Query: 453 YYQSES*LMQFGILPLSTMKMSCGGHLMLINVVALLHYWNL 575
YY +E+ + G +PLS +S INV + + WNL
Sbjct: 183 YYANENSSVMRGKIPLSIAVISVAAETHEINVDSGVELWNL 223
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 26.2 bits (55), Expect = 5.2
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = +2
Query: 533 DAHKRRCIAALLESTAETEKEIAEQLEVCKRELDEA 640
D +KR + L E + KE+A+QLE RE D A
Sbjct: 1014 DLNKR--VEVLKEEKESSSKELAKQLEDAVREKDSA 1047
>SPBC31F10.16 |||ChAPs family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 679
Score = 25.8 bits (54), Expect = 6.8
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = +2
Query: 107 VQEFLKNRVNEAIDEASK 160
+ EFL+ RVNE++D SK
Sbjct: 9 IPEFLETRVNESLDARSK 26
>SPAC3H1.01c |orp3|orc3, SPAP14E8.06c|origin recognition complex
subunit Orp3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 690
Score = 25.8 bits (54), Expect = 6.8
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = +2
Query: 65 EENIGSEDVNENEKVQEFLKNRVNEAIDEASKLKTADLRQPLL 193
+EN+ +D + E Q L+ +NE ++ KL+ A L+ L
Sbjct: 619 KENLKEDDNHPRESPQGNLQRELNELDEDKRKLEEAKLQSRFL 661
>SPAC3F10.03 |||glycine tRNA-ligase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 652
Score = 25.8 bits (54), Expect = 6.8
Identities = 10/30 (33%), Positives = 20/30 (66%)
Frame = +2
Query: 197 LIRLSIFYERESQNFNRIRFGQNFNGLVAN 286
+ R+S+F E+ + NR+RF Q+ + +A+
Sbjct: 333 MARISLFLEKIGIDMNRVRFRQHMSNEMAH 362
>SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein
Zds1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 938
Score = 25.8 bits (54), Expect = 6.8
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Frame = +2
Query: 56 VLSEENI--GSEDVNENEKVQEFLKNRVNEAIDEASKLKTADLRQP 187
+LS++NI +E+ NEN+ +E + NEA D+ A P
Sbjct: 78 LLSDQNITISNENNNENDTTEEAETSSGNEAADDEDSSSDAQSSVP 123
>SPAC13D6.04c |btb3||BTB/POZ domain protein Btb3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 523
Score = 25.4 bits (53), Expect = 9.0
Identities = 25/94 (26%), Positives = 42/94 (44%)
Frame = +2
Query: 362 DMTGVAAEAADVESLLRAYYEAQPKDKRLSVLSVRVITDAVRDFTLKHNEDVLRRAFDAH 541
D T +A E A ++ + A + KD+ L L+ VIT ++ + D+LR A+D
Sbjct: 367 DKTDIAPELA-LDVVYVADMLSLDKDRSLKSLASIVITK--QEEPIDSIYDILRTAWDTS 423
Query: 542 KRRCIAALLESTAETEKEIAEQLEVCKRELDEAD 643
R E A + + + E C+ + AD
Sbjct: 424 TPRLEQYASEYMANHLEHLIDDPEFCELVKESAD 457
>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1727
Score = 25.4 bits (53), Expect = 9.0
Identities = 18/58 (31%), Positives = 30/58 (51%)
Frame = +2
Query: 566 LESTAETEKEIAEQLEVCKRELDEADDEKLHTLVDASARPSAPAAQLIVPVVKLPNTV 739
LES +TEK ++LE E + E L +L ++S S+ A++L +V N +
Sbjct: 1277 LESQLQTEKAAVKKLENSNEEYKRHNQEILLSL-NSSTSTSSDASRLKNELVSKENLI 1333
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,443,499
Number of Sequences: 5004
Number of extensions: 40524
Number of successful extensions: 157
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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