Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc9n01
(769 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1284 + 32376870-32376874,32376876-32376935,32377166-323773... 63 3e-10
08_01_0522 - 4545166-4545174,4545295-4545447,4545566-4545727,454... 55 7e-08
07_03_1539 + 27567397-27568985,27569153-27569279,27569361-27569837 33 0.33
08_02_1482 - 27428208-27428514,27428605-27428906,27431176-274322... 31 1.0
05_04_0183 - 18849749-18850225,18850305-18850431,18851762-18853515 31 1.3
05_01_0217 + 1630083-1630205,1630467-1630710,1631695-1632508,163... 30 1.8
06_03_1053 + 27224824-27225618 29 3.1
11_06_0637 + 25715516-25716459,25718196-25718355 29 5.4
10_08_0495 - 18318028-18320399,18322450-18322981,18323097-183232... 29 5.4
07_03_0234 + 15561003-15561482,15562495-15562590,15562663-15562758 29 5.4
01_05_0276 - 20309224-20309910 28 7.1
11_06_0679 - 26227654-26227770,26234067-26236217 28 9.4
>04_04_1284 +
32376870-32376874,32376876-32376935,32377166-32377301,
32377439-32377596,32377791-32377881,32377975-32378094,
32378166-32378234,32378354-32378445,32378578-32378680,
32378761-32378868,32378949-32379011,32379073-32379144,
32379322-32379399,32379478-32379540,32379617-32379680,
32379817-32379902,32380456-32380569,32380760-32380837,
32381068-32381303,32381486-32381576,32381706-32381894,
32382082-32382117
Length = 703
Score = 62.9 bits (146), Expect = 3e-10
Identities = 40/99 (40%), Positives = 55/99 (55%)
Frame = +2
Query: 8 TPLPLQTVRPFIFKTIVLSEENIGSEDVNENEKVQEFLKNRVNEAIDEASKLKTADLRQP 187
T +PL++VRPF + +VL +E D N+ V E L V I ++S+ TA +
Sbjct: 321 TKIPLRSVRPFHYAEVVLKDEV--DVDPNDQASVLEHLDKIVRNLIKKSSQ-PTASRPET 377
Query: 188 LLPLIRLSIFYERESQNFNRIRFGQNFNGLVANPNDLLI 304
LPLIR+ + Y S N RFGQ + G VANP D+LI
Sbjct: 378 KLPLIRIKVDYSGFS-TINPQRFGQKYVGKVANPQDILI 415
>08_01_0522 -
4545166-4545174,4545295-4545447,4545566-4545727,
4545821-4545895,4545974-4546087,4546257-4546339,
4546496-4546556,4546664-4546726,4546804-4546908,
4547454-4547525,4547602-4547664,4547746-4547853,
4547937-4548039,4548131-4548207,4548335-4548403,
4548488-4548607,4548749-4548839,4549020-4549177,
4549696-4549834,4551164-4551186
Length = 615
Score = 54.8 bits (126), Expect = 7e-08
Identities = 60/221 (27%), Positives = 97/221 (43%), Gaps = 12/221 (5%)
Frame = +2
Query: 2 KLTPLPLQTVRPFIFKTIVLSEENIGSEDVNENEKVQEFLKN-----RVNEAIDEASKL- 163
K T +PL++VRPF + + L ++ +G E +N + E L N +N + + S L
Sbjct: 301 KQTNIPLKSVRPFQYAEVQLKDQ-LGVE-LNNEAALYEHLDNIFSAVLLNTELFQVSNLI 358
Query: 164 -KTA-DLRQPLLPLIRLSIFYERESQNFNRIRFGQNFNGLVANPNDLLIMXXXXXXXXXX 337
KTA +P LPL+R+ + Y S RFGQ + G VANPND+++
Sbjct: 359 DKTAISGSEPKLPLVRVKVDYSGFS-TITPQRFGQKYVGKVANPNDIILF----SRSAQQ 413
Query: 338 XXXXXXXGDMTGVAAEAADVESLLRAYYEAQPKDKRLSVLSVRVITDAVRDFTLKHN--- 508
G D +S+ E+ + + +L + A+ DF K
Sbjct: 414 NRTREHTGSSEECEPNELDQQSIEELIAES---NLNMQILDKNDLDSALHDFVNKDENMA 470
Query: 509 -EDVLRRAFDAHKRRCIAALLESTAETEKEIAEQLEVCKRE 628
L + DA K++ A + A E++I QL+ C +E
Sbjct: 471 FHSCLDKNIDAAKKKLTFATKDLKA--EEDIVLQLDQCMQE 509
>07_03_1539 + 27567397-27568985,27569153-27569279,27569361-27569837
Length = 730
Score = 32.7 bits (71), Expect = 0.33
Identities = 23/88 (26%), Positives = 39/88 (44%)
Frame = +3
Query: 369 RVWLQKLLMWSHFYVHIMKLSRRIRDFLYYQSES*LMQFGILPLSTMKMSCGGHLMLINV 548
RV L+ L++ + ++ LS + L + + + LP + + G M +
Sbjct: 491 RVALEWRLLYGRIFRAVVILSEKSNSDLAVEVSNLAQAYKFLPKVFDRFAGAGGFMFLQD 550
Query: 549 VALLHYWNLLQRPKKKLLNN*RFVSESW 632
+L+YWNL K KL + V ESW
Sbjct: 551 HMILNYWNLYDFDKAKLWITNK-VKESW 577
>08_02_1482 -
27428208-27428514,27428605-27428906,27431176-27432228,
27432305-27432421,27432510-27432843,27433064-27433188,
27433408-27433475,27433555-27433636,27433753-27433866,
27433942-27434042,27434145-27434234,27434615-27434819
Length = 965
Score = 31.1 bits (67), Expect = 1.0
Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
Frame = +2
Query: 416 YYEAQP-KDKRLSVLSVRVITDAVRDFTLKHNEDVLRRAFDAHKRRCIAALLESTAETEK 592
Y E P ++ L ++ + +AVRD L H+ LR D K + L E T +
Sbjct: 129 YIEKHPEREFILRFSAIEIYNEAVRDL-LSHDTTPLRLLDDPEKGTTVEKLTEETLRDKD 187
Query: 593 EIAEQLEVCKRE 628
+ L VC+ +
Sbjct: 188 HLRNLLAVCEAQ 199
>05_04_0183 - 18849749-18850225,18850305-18850431,18851762-18853515
Length = 785
Score = 30.7 bits (66), Expect = 1.3
Identities = 13/34 (38%), Positives = 23/34 (67%)
Frame = +3
Query: 555 LLHYWNLLQRPKKKLLNN*RFVSESWMKLMMRNS 656
+L+YWNLLQ K+KL + ++ SW+ + + N+
Sbjct: 608 ILNYWNLLQADKEKLWITNK-IAHSWVTVPLENN 640
>05_01_0217 +
1630083-1630205,1630467-1630710,1631695-1632508,
1632775-1632844,1633007-1633239,1633345-1633564
Length = 567
Score = 30.3 bits (65), Expect = 1.8
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 3/71 (4%)
Frame = +2
Query: 434 KDKRLSVLSVRVIT---DAVRDFTLKHNEDVLRRAFDAHKRRCIAALLESTAETEKEIAE 604
++KR+ + R + +RD +L ED +RR + C A+L + + +K+ E
Sbjct: 68 REKRVGAIEYRHFVCSKEGIRDPSLVKPEDCVRRERALTQMECAASL---SIKLDKKHVE 124
Query: 605 QLEVCKRELDE 637
EVC EL E
Sbjct: 125 HYEVCVSELRE 135
>06_03_1053 + 27224824-27225618
Length = 264
Score = 29.5 bits (63), Expect = 3.1
Identities = 27/84 (32%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
Frame = +2
Query: 452 VLSVRVITDAVRDFTLKHN-EDVLRRAFDAHKRRCIAALLESTAETEKEIAEQLEVCKRE 628
+L RV D R K E++ R F+ +RR A+L E+ + A +LE + E
Sbjct: 88 LLLERVSEDDARRLERKLKVEELARGKFELRRRRLTASLKEALVKAGGR-APKLETIQEE 146
Query: 629 LDEADDEKLHTLVDASARPSAPAA 700
D+ DD+ H D+ R A AA
Sbjct: 147 EDDDDDDS-HG--DSKRRRKAAAA 167
>11_06_0637 + 25715516-25716459,25718196-25718355
Length = 367
Score = 28.7 bits (61), Expect = 5.4
Identities = 19/59 (32%), Positives = 32/59 (54%)
Frame = +2
Query: 524 RAFDAHKRRCIAALLESTAETEKEIAEQLEVCKRELDEADDEKLHTLVDASARPSAPAA 700
R + +H++ + ++ S +K ++ E+ K + ADD H VDAS+ PS PAA
Sbjct: 300 RLYSSHQQHKVMMMMRSD---DKLNDQKQELAKSKDTPADDN--HEPVDASSVPSPPAA 353
>10_08_0495 -
18318028-18320399,18322450-18322981,18323097-18323200,
18323653-18323701,18323979-18324119,18324889-18324957,
18325048-18325137,18325301-18326251,18326831-18327502
Length = 1659
Score = 28.7 bits (61), Expect = 5.4
Identities = 23/63 (36%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Frame = +2
Query: 533 DAHK--RRCIAALLESTAETEKEIAEQLEVCKRELDEADDEKLHTLVDASARPSAPAAQL 706
DA K R A LL+S + E + LE R + E D L + DAS+ + PAA L
Sbjct: 294 DAKKVARGVAAPLLDSVNKLESNMKTNLE---RAMKENDRVYLMRVPDASSLGALPAASL 350
Query: 707 IVP 715
+ P
Sbjct: 351 VKP 353
>07_03_0234 + 15561003-15561482,15562495-15562590,15562663-15562758
Length = 223
Score = 28.7 bits (61), Expect = 5.4
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +2
Query: 557 AALLESTAETEKEIAEQLEVCKRELDEADDEKLHTLVDAS 676
+A + S + A Q+E KR LDE + HT +DAS
Sbjct: 113 SAAVSSVGDLRSSAASQMEALKRRLDEL-HSRAHTDLDAS 151
>01_05_0276 - 20309224-20309910
Length = 228
Score = 28.3 bits (60), Expect = 7.1
Identities = 20/58 (34%), Positives = 32/58 (55%)
Frame = +2
Query: 59 LSEENIGSEDVNENEKVQEFLKNRVNEAIDEASKLKTADLRQPLLPLIRLSIFYERES 232
L +E ++ V E EK+ ++R N AIDE S + D + P P+I IF +++S
Sbjct: 168 LVDEVCKAKGVEEAEKLVRSFQDR-NFAIDEKSIREHLDKKGPFSPVIWEVIFGKKKS 224
>11_06_0679 - 26227654-26227770,26234067-26236217
Length = 755
Score = 27.9 bits (59), Expect = 9.4
Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = -3
Query: 458 IVQKVSYPSAELHNMHVKVTPHQ-QLLQPH 372
I +V YP +LH H V P+Q Q+ QPH
Sbjct: 181 IPNQVQYPQTQLHQTH-PVLPNQIQIPQPH 209
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,373,805
Number of Sequences: 37544
Number of extensions: 251404
Number of successful extensions: 856
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 835
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 852
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2063219900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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