Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc9m22
         (714 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0470 + 9629062-9629355,9629948-9630893,9630948-9631102,963...    30   2.1  
01_01_0277 + 2274383-2274465,2274889-2274955,2275040-2275110,227...    28   6.4  
07_01_0279 + 2055310-2055541,2055916-2056235,2056734-2057213           28   8.5  

>09_02_0470 +
           9629062-9629355,9629948-9630893,9630948-9631102,
           9631299-9631358,9633374-9633444,9633626-9633663,
           9633824-9633876,9633970-9635235,9635632-9635672,
           9636821-9636887
          Length = 996

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 18/62 (29%), Positives = 30/62 (48%)
 Frame = +3

Query: 117 LVLTEDGAVLESGGELENDERIATIITDLITLSNEVDSVAFGPSENFKKISITFDDHWYI 296
           L+ T+   ++E    L   E+   II   +T S+EV +   G   ++K   ++ DD W I
Sbjct: 279 LISTDKNQLIELKEMLRGTEKCTKII---VTTSSEVSADLIGTVPSYKLHPLSDDDCWGI 335

Query: 297 IC 302
            C
Sbjct: 336 FC 337


>01_01_0277 +
           2274383-2274465,2274889-2274955,2275040-2275110,
           2275550-2275667,2275755-2275828,2276094-2276149,
           2276237-2276320,2276422-2276509,2276602-2276679,
           2276814-2276870,2277074-2277578
          Length = 426

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -2

Query: 77  NDFYNSVTWSWRKQQKQ 27
           N+FYN+  W WRK++ +
Sbjct: 386 NEFYNAAIWYWRKKRAE 402


>07_01_0279 + 2055310-2055541,2055916-2056235,2056734-2057213
          Length = 343

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 11/38 (28%), Positives = 18/38 (47%)
 Frame = +3

Query: 204 ITLSNEVDSVAFGPSENFKKISITFDDHWYIICLSNKK 317
           I +  E+D     PS+  K  ++  +  WY  CL  +K
Sbjct: 60  IEIIKEMDIYKHDPSDFLKTSTVGSEKEWYFFCLRGRK 97


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,033,580
Number of Sequences: 37544
Number of extensions: 283983
Number of successful extensions: 624
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 615
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 624
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1851002996
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)