Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc9m18
(738 letters)
Database: mosquito
2352 sequences; 563,979 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB090823-2|BAC57922.1| 1154|Anopheles gambiae reverse transcript... 44 5e-06
AB090820-2|BAC57916.1| 1222|Anopheles gambiae reverse transcript... 39 2e-04
AB090815-2|BAC57906.1| 973|Anopheles gambiae reverse transcript... 38 4e-04
AB090816-2|BAC57908.1| 1201|Anopheles gambiae reverse transcript... 37 6e-04
AB090812-2|BAC57900.1| 1173|Anopheles gambiae reverse transcript... 36 0.002
AB090813-2|BAC57902.1| 1099|Anopheles gambiae reverse transcript... 35 0.003
AJ970245-1|CAI96717.1| 134|Anopheles gambiae putative reverse t... 33 0.007
AB090818-2|BAC57912.1| 988|Anopheles gambiae reverse transcript... 33 0.007
AB090822-2|BAC57920.1| 1173|Anopheles gambiae reverse transcript... 33 0.012
M93691-2|AAA29365.1| 1222|Anopheles gambiae protein ( Anopheles ... 30 0.086
M93690-2|AAA29363.1| 1212|Anopheles gambiae unknown protein. 30 0.086
AB090821-2|BAC57918.1| 1168|Anopheles gambiae reverse transcript... 30 0.086
AB097127-1|BAC82595.1| 1209|Anopheles gambiae reverse transcript... 24 5.6
>AB090823-2|BAC57922.1| 1154|Anopheles gambiae reverse transcriptase
protein.
Length = 1154
Score = 44.0 bits (99), Expect = 5e-06
Identities = 21/62 (33%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Frame = -2
Query: 461 GDFNCHHQMFGCGTTDTNGVHLVEILDLQNLCLLNTGS-PTRRTKPNEKPSAVDLSICTP 285
GDFN H +G + G L++++++ L +LN GS PT + +PS +D++ TP
Sbjct: 122 GDFNAWHTEWGSRRNNLRGEELLQMVEVLGLSILNNGSAPTFIGRGAARPSVIDVTFATP 181
Query: 284 DL 279
L
Sbjct: 182 SL 183
Score = 30.7 bits (66), Expect = 0.049
Identities = 13/30 (43%), Positives = 20/30 (66%)
Frame = -1
Query: 102 ASYRPIALSSVLTKVAEHLVKNRLEWFIEN 13
+SYRP+++ L KV E L+ NRL +E+
Sbjct: 502 SSYRPLSMLDALGKVLEQLILNRLNKHLED 531
>AB090820-2|BAC57916.1| 1222|Anopheles gambiae reverse transcriptase
protein.
Length = 1222
Score = 38.7 bits (86), Expect = 2e-04
Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Frame = -2
Query: 461 GDFNCHHQMFGCGTTDTNGVHLVEILDLQNLCLLNTG-SPTRRTKPNEKPSAVDLSICTP 285
GD N H +G T+ G +V+++D L +LNTG +PT +PS VD++ +
Sbjct: 120 GDLNAWHTAWGSCRTNAKGEAVVQLVDSLGLEVLNTGTAPTFLGNGVARPSVVDVAFASS 179
Query: 284 DLA 276
+A
Sbjct: 180 SIA 182
>AB090815-2|BAC57906.1| 973|Anopheles gambiae reverse transcriptase
protein.
Length = 973
Score = 37.5 bits (83), Expect = 4e-04
Identities = 23/63 (36%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Frame = -2
Query: 461 GDFNCHHQMFGCGTTDTNGVHLVEILDLQNLCLLNTG-SPTRRTKPNEKPSAVDLSICTP 285
GDFN +G +T+ G ++E NL L+N G PT N + S +DL+ C+P
Sbjct: 119 GDFNAWATEWGSKSTNARGNAVLEHFSRLNLVLVNVGFCPT--FVRNSRTSIIDLTFCSP 176
Query: 284 DLA 276
LA
Sbjct: 177 ALA 179
Score = 27.1 bits (57), Expect = 0.60
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = -1
Query: 111 NDVASYRPIALSSVLTKVAEHLVKNRLEWFIENNN 7
+D ++ RP+AL K+ E L+ NRL + E +
Sbjct: 465 DDASALRPLALIDNFAKILEILILNRLVVYTEGEH 499
Score = 23.8 bits (49), Expect = 5.6
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = -2
Query: 167 VKYKLNNADWSAFKNLVESMMLP 99
VK N+A+W A + MM+P
Sbjct: 546 VKNAFNSANWEAIHAALSKMMIP 568
>AB090816-2|BAC57908.1| 1201|Anopheles gambiae reverse transcriptase
protein.
Length = 1201
Score = 37.1 bits (82), Expect = 6e-04
Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Frame = -2
Query: 461 GDFNCHHQMFGCGTTDTNGVHLVEILDLQNLCLLNTG-SPTRRTKPNEKPSAVDLSICTP 285
GDFN H+ +G G G+ L++ ++ L +LN G PT + S +D+S +
Sbjct: 185 GDFNAWHEEWGSGRNGQRGIELLQTVETLGLSILNQGRKPTFIGRGFAASSVIDVSFASR 244
Query: 284 DL 279
++
Sbjct: 245 EI 246
Score = 31.1 bits (67), Expect = 0.037
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = -1
Query: 102 ASYRPIALSSVLTKVAEHLVKNRLEWFIENNN 7
+SYRP+ + L KV E L+ NRL IE +
Sbjct: 563 SSYRPLCMLDALGKVLERLILNRLNRHIEQQD 594
>AB090812-2|BAC57900.1| 1173|Anopheles gambiae reverse transcriptase
protein.
Length = 1173
Score = 35.5 bits (78), Expect = 0.002
Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Frame = -2
Query: 461 GDFNCHHQMFGCGTTDTNGVHLVEILDLQNLCLLNTGS-PTRRTKPNEKPSAVDLSICTP 285
GDFN H +G G L++++ L ++N+G+ PT + S +D+ TP
Sbjct: 142 GDFNAWHTEWGSARNSQRGEDLLQLIQSVQLQVINSGNEPTFIGRGAATSSVIDVCFATP 201
Query: 284 DLA 276
+A
Sbjct: 202 SIA 204
Score = 27.1 bits (57), Expect = 0.60
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -1
Query: 102 ASYRPIALSSVLTKVAEHLVKNR 34
+SYRP+ + L KV E L+ NR
Sbjct: 510 SSYRPLCMLDALGKVLERLILNR 532
>AB090813-2|BAC57902.1| 1099|Anopheles gambiae reverse transcriptase
protein.
Length = 1099
Score = 34.7 bits (76), Expect = 0.003
Identities = 19/44 (43%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Frame = -1
Query: 141 LVCI*EPCRINDVA-SYRPIALSSVLTKVAEHLVKNRLEWFIEN 13
LV I +P + + V+ SYRP+ + L KV E L+ NRL F+E+
Sbjct: 474 LVLIPKPGKPSGVSCSYRPLCMLDALGKVLERLILNRLHEFLED 517
>AJ970245-1|CAI96717.1| 134|Anopheles gambiae putative reverse
transcriptase protein.
Length = 134
Score = 33.5 bits (73), Expect = 0.007
Identities = 16/33 (48%), Positives = 22/33 (66%)
Frame = -1
Query: 99 SYRPIALSSVLTKVAEHLVKNRLEWFIENNNFI 1
SYRPI+L S L K+ E L+++R+ NNN I
Sbjct: 1 SYRPISLLSCLGKIFEKLLESRMALHTFNNNII 33
>AB090818-2|BAC57912.1| 988|Anopheles gambiae reverse transcriptase
protein.
Length = 988
Score = 33.5 bits (73), Expect = 0.007
Identities = 15/30 (50%), Positives = 21/30 (70%)
Frame = -1
Query: 102 ASYRPIALSSVLTKVAEHLVKNRLEWFIEN 13
+SYRPI L SVL K+ E L++ RL +E+
Sbjct: 488 SSYRPICLLSVLGKILERLIQRRLTTHLES 517
Score = 27.5 bits (58), Expect = 0.46
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -2
Query: 371 LCLLNTGSPTRRTKPNEKPSAVDLSICTPDL 279
L LLN G+ + N + S VD+S C+P L
Sbjct: 159 LVLLNQGNQSTWIGANGRNSIVDVSFCSPSL 189
>AB090822-2|BAC57920.1| 1173|Anopheles gambiae reverse transcriptase
protein.
Length = 1173
Score = 32.7 bits (71), Expect = 0.012
Identities = 14/30 (46%), Positives = 21/30 (70%)
Frame = -1
Query: 102 ASYRPIALSSVLTKVAEHLVKNRLEWFIEN 13
+S+RP+ + + L KV E L+ NRL F+EN
Sbjct: 508 SSFRPLGMLNGLGKVLERLILNRLNEFLEN 537
>M93691-2|AAA29365.1| 1222|Anopheles gambiae protein ( Anopheles
gambiae RT2 retroposon. ).
Length = 1222
Score = 29.9 bits (64), Expect = 0.086
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = -1
Query: 102 ASYRPIALSSVLTKVAEHLVKNRLEWFIE 16
+SYRP+ + L KV E L+ NRL +E
Sbjct: 548 SSYRPLCMLDALGKVLERLILNRLNEHLE 576
>M93690-2|AAA29363.1| 1212|Anopheles gambiae unknown protein.
Length = 1212
Score = 29.9 bits (64), Expect = 0.086
Identities = 21/89 (23%), Positives = 35/89 (39%), Gaps = 4/89 (4%)
Frame = -2
Query: 602 SNDAINIVGIKIDNISIVSIY----LARXXXXXXXXXXXXXXXXXXXXXXLGDFNCHHQM 435
S+D ++ K+ I+ +S Y L+R GDFN H+
Sbjct: 128 SSDVPGLIAAKVGGITFLSCYAPPSLSREGFAEFVEAIELEAQSHPQVVVAGDFNAWHEE 187
Query: 434 FGCGTTDTNGVHLVEILDLQNLCLLNTGS 348
+G ++ G L+E L L+N G+
Sbjct: 188 WGSRRSNERGEVLLEASQQLGLLLMNRGN 216
Score = 29.1 bits (62), Expect = 0.15
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = -1
Query: 99 SYRPIALSSVLTKVAEHLVKNRLEWFIEN 13
SYRP+ + L KV E L+ NRL +E+
Sbjct: 556 SYRPLCMLDALGKVLEKLILNRLHNHLED 584
>AB090821-2|BAC57918.1| 1168|Anopheles gambiae reverse transcriptase
protein.
Length = 1168
Score = 29.9 bits (64), Expect = 0.086
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = -2
Query: 461 GDFNCHHQMFGCGTTDTNGVHLVEILDLQNLCLLN 357
GDFN H +G T G+ L+++ D L LLN
Sbjct: 121 GDFNAMHLDWGSSRTCPKGLELLQLADNLGLVLLN 155
Score = 27.1 bits (57), Expect = 0.60
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = -1
Query: 102 ASYRPIALSSVLTKVAEHLVKNRLEWFIEN 13
+S+RPI L K E L+ NRL +IE+
Sbjct: 497 SSFRPICLLDNTGKALERLLLNRLNEYIED 526
>AB097127-1|BAC82595.1| 1209|Anopheles gambiae reverse transcriptase
protein.
Length = 1209
Score = 23.8 bits (49), Expect = 5.6
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = -1
Query: 102 ASYRPIALSSVLTKVAEHLVKNRLEWFIENNN 7
A YRP+ S L KV ++ +++ + NN
Sbjct: 532 AKYRPLTCLSNLNKVLSSVITQKVKDHCDTNN 563
Database: mosquito
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 563,979
Number of sequences in database: 2352
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 658,191
Number of Sequences: 2352
Number of extensions: 11357
Number of successful extensions: 34
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 75676146
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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