Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc9m15
         (694 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22A12.09c |sap114||splicing factor Sap114|Schizosaccharomyce...    30   0.36 
SPBC32F12.11 |tdh1|gpd1|glyceraldehyde-3-phosphate dehydrogenase...    27   3.4  
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo...    26   4.5  
SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar...    26   4.5  
SPAC19D5.02c |||peroxisomal membrane protein Pex22 |Schizosaccha...    26   4.5  
SPBC354.12 |gpd3||glyceraldehyde 3-phosphate dehydrogenase Gpd3|...    26   5.9  
SPBC577.10 |||20S proteasome component beta 7|Schizosaccharomyce...    25   7.9  

>SPAC22A12.09c |sap114||splicing factor Sap114|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 481

 Score = 29.9 bits (64), Expect = 0.36
 Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = +2

Query: 548 PTLA-PERPEISLTTSIDNPPETEQPVWKPNLIAKITKGVPEGYQ 679
           P+LA PE+  IS TTS+ +P     PV       K+ K VP+ +Q
Sbjct: 335 PSLASPEKGGISSTTSV-SPAAQASPVLSTTTQPKVQKPVPKAFQ 378


>SPBC32F12.11 |tdh1|gpd1|glyceraldehyde-3-phosphate dehydrogenase
           Tdh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 336

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 20/71 (28%), Positives = 30/71 (42%), Gaps = 4/71 (5%)
 Frame = +2

Query: 110 ESQDVNFTQ-TLSEPLTIGSHIICTGTPSEDIPWFAINIGSEELEAGR---SDISVHFNV 277
           ES  V  TQ T S  L  G+  +    PS+D P + + +  E+        S+ S   N 
Sbjct: 97  ESTGVFTTQETASAHLKGGAKRVIISAPSKDAPMYVVGVNEEKFNPSEKVISNASCTTNC 156

Query: 278 RQPQCYVVRNT 310
             P   V+ +T
Sbjct: 157 LAPLAKVINDT 167


>SPAC17C9.03 |tif471||translation initiation factor eIF4G
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1403

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
 Frame = +2

Query: 578 SLTTSI-DNPPETEQPV-WKPNLIAKITKG 661
           S+ +S+  NPP TE+PV  KP   +  TKG
Sbjct: 201 SVNSSVTSNPPHTEEPVAAKPEASSTATKG 230


>SPAC26A3.09c |rga2||GTPase activating protein
           Rga2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1275

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 16/56 (28%), Positives = 25/56 (44%)
 Frame = +2

Query: 500 TGIRDAFLKISKTDNYPTLAPERPEISLTTSIDNPPETEQPVWKPNLIAKITKGVP 667
           T +R    K   TD++P+  P R     + S  +P E  +    P +  K +K VP
Sbjct: 110 TSLRMRLSKYESTDSFPSSQPSRANSPQSDSYSSPYEKGKLF--PKISLKSSKDVP 163


>SPAC19D5.02c |||peroxisomal membrane protein Pex22
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 223

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 20/65 (30%), Positives = 30/65 (46%)
 Frame = +2

Query: 401 VDETETLWAVDGDHYCSYVHRNPSPFTARWIEVTGIRDAFLKISKTDNYPTLAPERPEIS 580
           +DE +TL  V  DHY      + S   A++ +V    D F   S++     L P  P   
Sbjct: 86  IDEIKTLPKVPRDHYIILCDSSESNEIAKFTQVVHSFD-FSSDSESAVVEQLHPSSPIPI 144

Query: 581 LTTSI 595
           LTT++
Sbjct: 145 LTTAV 149


>SPBC354.12 |gpd3||glyceraldehyde 3-phosphate dehydrogenase
           Gpd3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 335

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 16/62 (25%), Positives = 26/62 (41%), Gaps = 3/62 (4%)
 Frame = +2

Query: 134 QTLSEPLTIGSHIICTGTPSEDIPWFAINIGSEELEAGR---SDISVHFNVRQPQCYVVR 304
           +T S  L  G+  +    PS+D P F + +  E+        S+ S   N   P   V+ 
Sbjct: 106 ETASAHLKGGAKRVIISAPSKDAPMFVVGVNLEKFNPSEKVISNASCTTNCLAPLAKVIN 165

Query: 305 NT 310
           +T
Sbjct: 166 DT 167


>SPBC577.10 |||20S proteasome component beta 7|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 262

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 15/50 (30%), Positives = 24/50 (48%)
 Frame = -2

Query: 273 LKCTEMSERPASNSSLPMFIANHGMSSLGVPVQIICEPIVKGSDKVCVKF 124
           L+ TE+  +P  +   P    +    S   P+Q   +PIV GS  + +KF
Sbjct: 4   LELTEVWGKPQKDIFFPS--GSEVEESTDAPIQRTVQPIVTGSSVLALKF 51


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,822,620
Number of Sequences: 5004
Number of extensions: 58881
Number of successful extensions: 164
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)