Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc9m15
         (694 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0761 - 27515441-27515650,27515967-27516074,27516666-275168...    33   0.22 
01_03_0306 + 14875755-14876822                                         30   1.5  
02_05_0463 - 29248675-29249391,29250024-29250142,29250276-292504...    28   8.1  

>03_05_0761 -
           27515441-27515650,27515967-27516074,27516666-27516839,
           27517185-27517469,27517688-27517920,27519422-27520139
          Length = 575

 Score = 33.1 bits (72), Expect = 0.22
 Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 10/71 (14%)
 Frame = +2

Query: 152 LTIGSHIICTGTP----SEDIPWFAINI-GSEELEAGRSDISVHFNVR-----QPQCYVV 301
           L +GSH+   G+P    +  +  FA+ + G  + +   +   +HFN R       +  + 
Sbjct: 154 LGLGSHVTVVGSPRRVAANAVAQFAVEVRGGGDGDGDEAARILHFNPRLRGDWSGRPVIE 213

Query: 302 RNTRRRGKWGP 334
           +NTR RG+WGP
Sbjct: 214 QNTRFRGQWGP 224


>01_03_0306 + 14875755-14876822
          Length = 355

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -2

Query: 636 FGFQTGCSVSGGLSMLVVREISGLSGANVG*LSVLDI 526
           FG  TGC++  G  ++  R   G+     G + VLDI
Sbjct: 40  FGIGTGCAIGEGFEIICNRNADGIDQPFTGNIEVLDI 76


>02_05_0463 -
           29248675-29249391,29250024-29250142,29250276-29250495,
           29250621-29250739,29251013-29251093,29251751-29251802,
           29252392-29252514
          Length = 476

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 19/76 (25%), Positives = 34/76 (44%)
 Frame = +2

Query: 332 PEETTAYRLYPFKVNKQFTIEIVVDETETLWAVDGDHYCSYVHRNPSPFTARWIEVTGIR 511
           P +T      PF  ++ FT+        T   V   H+  + + +P  F A W++ + IR
Sbjct: 333 PSKTKDIDYLPFFYSRVFTLSWQFYGNNTGEVV---HFGDFTNSSPR-FGAYWVDKSRIR 388

Query: 512 DAFLKISKTDNYPTLA 559
            AFL+    + Y  ++
Sbjct: 389 GAFLEGGSREEYEAIS 404


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,227,036
Number of Sequences: 37544
Number of extensions: 381883
Number of successful extensions: 893
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 880
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 893
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)