Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc9m14
         (715 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_1116 + 9197761-9199956                                           31   1.2  
04_03_0073 - 10702352-10702619,10702702-10702836,10702915-10703594     30   2.1  
01_06_0795 - 32051794-32053362,32053452-32053595,32054102-320549...    29   2.8  
11_01_0349 - 2614682-2614721,2614881-2614955,2615346-2615538,261...    29   3.7  

>06_01_1116 + 9197761-9199956
          Length = 731

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = -1

Query: 604 SMINPSQNLKSSKKMCFVFILFIFLKNTYKWSMINCHHSISCH 476
           SM+    +L+ S  MCF +IL ++    + W M N  +   C+
Sbjct: 592 SMLQIQWDLEFSAIMCFSYILLVYYTEEWSWPMENERNKEKCN 634


>04_03_0073 - 10702352-10702619,10702702-10702836,10702915-10703594
          Length = 360

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 16/37 (43%), Positives = 18/37 (48%)
 Frame = -3

Query: 323 HRSQPPASSVSHVHASQYDLRLVQDILRNVNRTEAFS 213
           H S P A      HA  YD++L  D     NRTEA S
Sbjct: 36  HASAPSARPAQDRHAQSYDVQLQYDTDFGENRTEADS 72


>01_06_0795 -
           32051794-32053362,32053452-32053595,32054102-32054965,
           32055335-32055892
          Length = 1044

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 16/49 (32%), Positives = 27/49 (55%)
 Frame = -3

Query: 284 HASQYDLRLVQDILRNVNRTEAFSCIRTYSIKLLVLFVLCDLRQHEERR 138
           H + +D+R +Q +LRN+     F      + ++LV+ V C  R+HE  R
Sbjct: 313 HGAVHDIRHLQTLLRNLTSNLTFQEAYDMTGRILVVTV-CSPRKHEPPR 360


>11_01_0349 -
           2614682-2614721,2614881-2614955,2615346-2615538,
           2615654-2616287
          Length = 313

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 16/32 (50%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
 Frame = -1

Query: 148 KNEDSPSDLRGSRPSRQL-MGSVSSDEGPETE 56
           ++ DSPS   GS PSR+L +  V+ D GPE E
Sbjct: 216 RDTDSPSFSAGSAPSRRLRLFGVNLDCGPEPE 247


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,392,712
Number of Sequences: 37544
Number of extensions: 332096
Number of successful extensions: 850
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 833
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 850
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1851002996
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)