Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc9m14
         (715 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014296-2250|AAF49838.2|  714|Drosophila melanogaster CG11281-P...    29   6.3  
AE014298-827|AAF46107.1| 1793|Drosophila melanogaster CG4790-PA ...    29   8.3  

>AE014296-2250|AAF49838.2|  714|Drosophila melanogaster CG11281-PA
           protein.
          Length = 714

 Score = 29.1 bits (62), Expect = 6.3
 Identities = 11/40 (27%), Positives = 23/40 (57%)
 Frame = -3

Query: 500 LPSFHIMPLHFKKSVVLQYTMILVLNITQNYYIRLQKSNC 381
           LP+ H++P      ++L Y +I+VL      ++R+++  C
Sbjct: 541 LPNAHVLPKKMYYQLILLYLIIIVLIYQSTTFLRMRRVIC 580


>AE014298-827|AAF46107.1| 1793|Drosophila melanogaster CG4790-PA
           protein.
          Length = 1793

 Score = 28.7 bits (61), Expect = 8.3
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +3

Query: 69  PSSDDTLPMSCRDGLDPRKSDGESSFFMLPQITQHEQ 179
           PS+   LP SCR+GL+   S  E     +  + +HE+
Sbjct: 36  PSAAQLLPSSCRNGLNGSSSGPEIRLPFVDMMVRHEK 72


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,205,749
Number of Sequences: 53049
Number of extensions: 606122
Number of successful extensions: 1570
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1513
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1568
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3170136354
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)