Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc9m14
         (715 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81100-5|CAE11310.1|  335|Caenorhabditis elegans Hypothetical pr...    29   4.4  
Z81100-2|CAB03192.2|  332|Caenorhabditis elegans Hypothetical pr...    29   4.4  
Z81100-4|CAE11309.1|  333|Caenorhabditis elegans Hypothetical pr...    28   5.8  
X59156-6|CAA41878.1|  160|Caenorhabditis elegans transposase pro...    28   7.6  

>Z81100-5|CAE11310.1|  335|Caenorhabditis elegans Hypothetical
           protein K08G2.13 protein.
          Length = 335

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = -2

Query: 420 YSKLLHKASKVELFRFEVGEYVMISDRCPRAL 325
           YSK+LH  + +E+    +G Y++IS + P+ L
Sbjct: 15  YSKILHTLTMIEVVTHSLGAYIIIS-KTPKKL 45


>Z81100-2|CAB03192.2|  332|Caenorhabditis elegans Hypothetical
           protein K08G2.5 protein.
          Length = 332

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -2

Query: 420 YSKLLHKASKVELFRFEVGEYVMIS 346
           YSKLLH  + +E+     G Y++IS
Sbjct: 15  YSKLLHSLTMIEIVTHSFGAYIIIS 39


>Z81100-4|CAE11309.1|  333|Caenorhabditis elegans Hypothetical
           protein K08G2.12 protein.
          Length = 333

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -2

Query: 420 YSKLLHKASKVELFRFEVGEYVMIS 346
           YSKLLH  + +E+     G Y++IS
Sbjct: 15  YSKLLHTLTVIEIITHSFGAYIIIS 39


>X59156-6|CAA41878.1|  160|Caenorhabditis elegans transposase
           protein.
          Length = 160

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -1

Query: 562 MCFVFILFIFLKNTYKWSMIN 500
           +CF  I F F+KN Y +S IN
Sbjct: 140 VCFSLIFFSFMKNCYFYSTIN 160


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,989,130
Number of Sequences: 27780
Number of extensions: 327447
Number of successful extensions: 833
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 809
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 833
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1666201324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)