Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc9m14
         (715 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            24   1.6  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   6.6  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    21   8.8  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    21   8.8  

>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -3

Query: 284 HASQYDLRLVQDILRNVNRTEAF 216
           H    DLR +   +RN+NRT  F
Sbjct: 211 HMWPSDLRTIYSRVRNLNRTHGF 233


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -1

Query: 706 FYILCIQIYFQKYNYF 659
           FYI CI + F  YN F
Sbjct: 352 FYIPCIIMVFLYYNIF 367


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = -2

Query: 141 KIPRQTYEGRGR 106
           +I  QTYEG+GR
Sbjct: 69  QIDGQTYEGKGR 80


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 9/43 (20%), Positives = 24/43 (55%)
 Frame = -3

Query: 539 HIPKKHI*VVND*LPSFHIMPLHFKKSVVLQYTMILVLNITQN 411
           ++P ++  +V+    +F     HF   + + Y+M+L++++  N
Sbjct: 33  NVPPEYSDLVHPHWRAFPAPGKHFHIGLAIIYSMLLIMSLVGN 75


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 189,909
Number of Sequences: 438
Number of extensions: 3924
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22048515
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)