Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc9m12
(708 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF308473-1|AAG33618.1| 283|Homo sapiens ATP-binding cassette ha... 67 5e-11
AF308472-1|AAG33617.1| 896|Homo sapiens ATP-binding cassette ha... 67 5e-11
AB209054-1|BAD92291.1| 398|Homo sapiens ATP-binding cassette, s... 67 5e-11
BC000559-1|AAH00559.1| 842|Homo sapiens ATP-binding cassette, s... 65 3e-10
AJ289233-1|CAB95766.2| 842|Homo sapiens ABC transporter umat pr... 65 3e-10
AF076775-1|AAF75107.1| 842|Homo sapiens MT-ABC transporter prot... 65 3e-10
AB039371-1|BAA96733.1| 842|Homo sapiens mitochondrial ABC trans... 65 3e-10
AK057026-1|BAB71347.1| 766|Homo sapiens protein ( Homo sapiens ... 36 0.14
AB065817-1|BAC06036.1| 312|Homo sapiens seven transmembrane hel... 31 5.3
>AF308473-1|AAG33618.1| 283|Homo sapiens ATP-binding cassette
half-transporter protein.
Length = 283
Score = 67.3 bits (157), Expect = 5e-11
Identities = 55/216 (25%), Positives = 96/216 (44%), Gaps = 16/216 (7%)
Frame = +1
Query: 88 KPRVIMM---KYCPPNVTLGEIWVDHGISQCFMETV---SAVFIGGFLLVLGTTQIVIYK 249
+PR+ M+ YC +G W+ G+S CF T+ + + +G LVL +
Sbjct: 50 RPRIAMVTVGNYCEAEGPVGPAWMQDGLSPCFFFTLVPSTRMALGTLALVLALPCRRRER 109
Query: 250 SHATEVMDVRSSKLFGVQMFFTLLVPVLAVIRFLLQALLFKSGCVYG-----YMVVALTV 414
+ + + + LL + A + L L + G G Y+++A +
Sbjct: 110 PAGADSLSWGAGPRISPYVLQLLLATLQAALP--LAGLAGRVGTARGAPLPSYLLLASVL 167
Query: 415 TLVVFPLSAYLAILER-----RFLLPSVPPRGHGFVLLVFWAMIFVSENLSFLNINKEGW 579
+ +L ++ER R + H LL+ W + F +ENL+ ++ N W
Sbjct: 168 ESLAGACGLWLLVVERSQARQRLAMGIWIKFRHSPGLLLLWTVAFAAENLALVSWNNPQW 227
Query: 580 WWHLKNLQDRLEMSLFVGRYVSCMIMFVLGMKAPGI 687
WW +L +++ SL+V RYV +FVLG+ APG+
Sbjct: 228 WWARADLGQQVQFSLWVLRYVVSGGLFVLGLWAPGL 263
>AF308472-1|AAG33617.1| 896|Homo sapiens ATP-binding cassette
half-transporter protein.
Length = 896
Score = 67.3 bits (157), Expect = 5e-11
Identities = 55/216 (25%), Positives = 96/216 (44%), Gaps = 16/216 (7%)
Frame = +1
Query: 88 KPRVIMM---KYCPPNVTLGEIWVDHGISQCFMETV---SAVFIGGFLLVLGTTQIVIYK 249
+PR+ M+ YC +G W+ G+S CF T+ + + +G LVL +
Sbjct: 50 RPRIAMVTVGNYCEAEGPVGPAWMQDGLSPCFFFTLVPSTRMALGTLALVLALPCRRRER 109
Query: 250 SHATEVMDVRSSKLFGVQMFFTLLVPVLAVIRFLLQALLFKSGCVYG-----YMVVALTV 414
+ + + + LL + A + L L + G G Y+++A +
Sbjct: 110 PAGADSLSWGAGPRISPYVLQLLLATLQAALP--LAGLAGRVGTARGAPLPSYLLLASVL 167
Query: 415 TLVVFPLSAYLAILER-----RFLLPSVPPRGHGFVLLVFWAMIFVSENLSFLNINKEGW 579
+ +L ++ER R + H LL+ W + F +ENL+ ++ N W
Sbjct: 168 ESLAGACGLWLLVVERSQARQRLAMGIWIKFRHSPGLLLLWTVAFAAENLALVSWNSPQW 227
Query: 580 WWHLKNLQDRLEMSLFVGRYVSCMIMFVLGMKAPGI 687
WW +L +++ SL+V RYV +FVLG+ APG+
Sbjct: 228 WWARADLGQQVQFSLWVLRYVVSGGLFVLGLWAPGL 263
>AB209054-1|BAD92291.1| 398|Homo sapiens ATP-binding cassette,
sub-family B, member 6 variant protein.
Length = 398
Score = 67.3 bits (157), Expect = 5e-11
Identities = 55/216 (25%), Positives = 96/216 (44%), Gaps = 16/216 (7%)
Frame = +1
Query: 88 KPRVIMM---KYCPPNVTLGEIWVDHGISQCFMETV---SAVFIGGFLLVLGTTQIVIYK 249
+PR+ M+ YC +G W+ G+S CF T+ + + +G LVL +
Sbjct: 49 RPRIAMVTVGNYCEAEGPVGPAWMQDGLSPCFFFTLVPSTRMALGTLALVLALPCRRRER 108
Query: 250 SHATEVMDVRSSKLFGVQMFFTLLVPVLAVIRFLLQALLFKSGCVYG-----YMVVALTV 414
+ + + + LL + A + L L + G G Y+++A +
Sbjct: 109 PAGADSLSWGAGPRISPYVLQLLLATLQAALP--LAGLAGRVGTARGAPLPSYLLLASVL 166
Query: 415 TLVVFPLSAYLAILER-----RFLLPSVPPRGHGFVLLVFWAMIFVSENLSFLNINKEGW 579
+ +L ++ER R + H LL+ W + F +ENL+ ++ N W
Sbjct: 167 ESLAGACGLWLLVVERSQARQRLAMGIWIKFRHSPGLLLLWTVAFAAENLALVSWNSPQW 226
Query: 580 WWHLKNLQDRLEMSLFVGRYVSCMIMFVLGMKAPGI 687
WW +L +++ SL+V RYV +FVLG+ APG+
Sbjct: 227 WWARADLGQQVQFSLWVLRYVVSGGLFVLGLWAPGL 262
>BC000559-1|AAH00559.1| 842|Homo sapiens ATP-binding cassette,
sub-family B (MDR/TAP), member 6 protein.
Length = 842
Score = 64.9 bits (151), Expect = 3e-10
Identities = 53/210 (25%), Positives = 92/210 (43%), Gaps = 13/210 (6%)
Frame = +1
Query: 97 VIMMKYCPPNVTLGEIWVDHGISQCFMETV---SAVFIGGFLLVLGTTQIVIYKSHATEV 267
V + YC +G W+ G+S CF T+ + + +G LVL + +
Sbjct: 2 VTVGNYCEAEGPVGPAWMQDGLSPCFFFTLVPSTRMALGTLALVLALPCRRRERPAGADS 61
Query: 268 MDVRSSKLFGVQMFFTLLVPVLAVIRFLLQALLFKSGCVYG-----YMVVALTVTLVVFP 432
+ + + LL + A + L L + G G Y+++A + +
Sbjct: 62 LSWGAGPRISPYVLQLLLATLQAALP--LAGLAGRVGTARGAPLPSYLLLASVLESLAGA 119
Query: 433 LSAYLAILER-----RFLLPSVPPRGHGFVLLVFWAMIFVSENLSFLNINKEGWWWHLKN 597
+L ++ER R + H LL+ W + F +ENL+ ++ N WWW +
Sbjct: 120 CGLWLLVVERSQARQRLAMGIWIKFRHSPGLLLLWTVAFAAENLALVSWNSPQWWWARAD 179
Query: 598 LQDRLEMSLFVGRYVSCMIMFVLGMKAPGI 687
L +++ SL+V RYV +FVLG+ APG+
Sbjct: 180 LGQQVQFSLWVLRYVVSGGLFVLGLWAPGL 209
>AJ289233-1|CAB95766.2| 842|Homo sapiens ABC transporter umat
protein.
Length = 842
Score = 64.9 bits (151), Expect = 3e-10
Identities = 53/210 (25%), Positives = 92/210 (43%), Gaps = 13/210 (6%)
Frame = +1
Query: 97 VIMMKYCPPNVTLGEIWVDHGISQCFMETV---SAVFIGGFLLVLGTTQIVIYKSHATEV 267
V + YC +G W+ G+S CF T+ + + +G LVL + +
Sbjct: 2 VTVGNYCEAEGPVGPAWMQDGLSPCFFFTLVPSTRMALGTLALVLALPCRRRERPAGADS 61
Query: 268 MDVRSSKLFGVQMFFTLLVPVLAVIRFLLQALLFKSGCVYG-----YMVVALTVTLVVFP 432
+ + + LL + A + L L + G G Y+++A + +
Sbjct: 62 LSWGAGPRISPYVLQLLLATLQAALP--LAGLAGRVGTARGAPLPSYLLLASVLESLAGA 119
Query: 433 LSAYLAILER-----RFLLPSVPPRGHGFVLLVFWAMIFVSENLSFLNINKEGWWWHLKN 597
+L ++ER R + H LL+ W + F +ENL+ ++ N WWW +
Sbjct: 120 CGLWLLVVERSQARQRLAMGIWIKFRHSPGLLLLWTVAFAAENLALVSWNSPQWWWARAD 179
Query: 598 LQDRLEMSLFVGRYVSCMIMFVLGMKAPGI 687
L +++ SL+V RYV +FVLG+ APG+
Sbjct: 180 LGQQVQFSLWVLRYVVSGGLFVLGLWAPGL 209
>AF076775-1|AAF75107.1| 842|Homo sapiens MT-ABC transporter
protein.
Length = 842
Score = 64.9 bits (151), Expect = 3e-10
Identities = 53/210 (25%), Positives = 92/210 (43%), Gaps = 13/210 (6%)
Frame = +1
Query: 97 VIMMKYCPPNVTLGEIWVDHGISQCFMETV---SAVFIGGFLLVLGTTQIVIYKSHATEV 267
V + YC +G W+ G+S CF T+ + + +G LVL + +
Sbjct: 2 VTVGNYCEAEGPVGPAWMQDGLSPCFFFTLVPSTRMALGTLALVLALPCRRRERPAGADS 61
Query: 268 MDVRSSKLFGVQMFFTLLVPVLAVIRFLLQALLFKSGCVYG-----YMVVALTVTLVVFP 432
+ + + LL + A + L L + G G Y+++A + +
Sbjct: 62 LSWGAGPRISPYVLQLLLATLQAALP--LAGLAGRVGTARGAPLPSYLLLASVLESLAGA 119
Query: 433 LSAYLAILER-----RFLLPSVPPRGHGFVLLVFWAMIFVSENLSFLNINKEGWWWHLKN 597
+L ++ER R + H LL+ W + F +ENL+ ++ N WWW +
Sbjct: 120 CGLWLLVVERSQARQRLAMGIWIKFRHSPGLLLLWTVAFAAENLALVSWNSPQWWWARAD 179
Query: 598 LQDRLEMSLFVGRYVSCMIMFVLGMKAPGI 687
L +++ SL+V RYV +FVLG+ APG+
Sbjct: 180 LGQQVQFSLWVLRYVVSGGLFVLGLWAPGL 209
>AB039371-1|BAA96733.1| 842|Homo sapiens mitochondrial ABC
transporter 3 protein.
Length = 842
Score = 64.9 bits (151), Expect = 3e-10
Identities = 53/210 (25%), Positives = 92/210 (43%), Gaps = 13/210 (6%)
Frame = +1
Query: 97 VIMMKYCPPNVTLGEIWVDHGISQCFMETV---SAVFIGGFLLVLGTTQIVIYKSHATEV 267
V + YC +G W+ G+S CF T+ + + +G LVL + +
Sbjct: 2 VTVGNYCEAEGPVGPAWMQDGLSPCFFFTLVPSTRMALGTLALVLALPCRRRERPAGADS 61
Query: 268 MDVRSSKLFGVQMFFTLLVPVLAVIRFLLQALLFKSGCVYG-----YMVVALTVTLVVFP 432
+ + + LL + A + L L + G G Y+++A + +
Sbjct: 62 LSWGAGPRISPYVLQLLLATLQAALP--LAGLAGRVGTARGAPLPSYLLLASVLESLAGA 119
Query: 433 LSAYLAILER-----RFLLPSVPPRGHGFVLLVFWAMIFVSENLSFLNINKEGWWWHLKN 597
+L ++ER R + H LL+ W + F +ENL+ ++ N WWW +
Sbjct: 120 CGLWLLVVERSQARQRLAMGIWIKFRHSPGLLLLWTVAFAAENLALVSWNSPQWWWARAD 179
Query: 598 LQDRLEMSLFVGRYVSCMIMFVLGMKAPGI 687
L +++ SL+V RYV +FVLG+ APG+
Sbjct: 180 LGQQVQFSLWVLRYVVSGGLFVLGLWAPGL 209
>AK057026-1|BAB71347.1| 766|Homo sapiens protein ( Homo sapiens
cDNA FLJ32464 fis, clone SKNMC1000251, highly similar to
Homo sapiens MT-ABC transporter (MTABC) mRNA. ).
Length = 766
Score = 35.9 bits (79), Expect = 0.14
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +1
Query: 496 HGFVLLVFWAMIFVSENLSFLNINKEGWWW 585
H LL+ W + F +ENL+ ++ N WWW
Sbjct: 116 HSPGLLLLWTVAFAAENLALVSWNSPQWWW 145
>AB065817-1|BAC06036.1| 312|Homo sapiens seven transmembrane helix
receptor protein.
Length = 312
Score = 30.7 bits (66), Expect = 5.3
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = +1
Query: 370 KSGCVYGYMVVALTVTLVVFPLSAYLAILERRFLLPSVPPRGHGF 504
K +YG MV++ + V+ S+Y+ IL F LPS R F
Sbjct: 195 KINIIYGLMVISYIIVDVILIASSYVLILRAVFRLPSQDVRLKAF 239
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 115,188,446
Number of Sequences: 237096
Number of extensions: 2718744
Number of successful extensions: 8794
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 8624
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8794
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8231208258
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -