Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc9m12
         (708 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z80214-5|CAJ76929.1|  916|Caenorhabditis elegans Hypothetical pr...    28   7.5  
Z80214-4|CAB02263.1|  982|Caenorhabditis elegans Hypothetical pr...    28   7.5  
Z84574-2|CAB06542.1|  488|Caenorhabditis elegans Hypothetical pr...    27   9.9  
Z82057-2|CAD89759.1|  561|Caenorhabditis elegans Hypothetical pr...    27   9.9  

>Z80214-5|CAJ76929.1|  916|Caenorhabditis elegans Hypothetical
           protein C27D8.3b protein.
          Length = 916

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = -2

Query: 653 IIHDT*RPTNNDISRRS*RFFKCHHHPSLL 564
           I++   RP NN+++++     + HHHPSL+
Sbjct: 838 IVYSAARP-NNNLNQQQQHHHQSHHHPSLI 866


>Z80214-4|CAB02263.1|  982|Caenorhabditis elegans Hypothetical
           protein C27D8.3a protein.
          Length = 982

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = -2

Query: 653 IIHDT*RPTNNDISRRS*RFFKCHHHPSLL 564
           I++   RP NN+++++     + HHHPSL+
Sbjct: 904 IVYSAARP-NNNLNQQQQHHHQSHHHPSLI 932


>Z84574-2|CAB06542.1|  488|Caenorhabditis elegans Hypothetical
           protein F33E2.3 protein.
          Length = 488

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 10/33 (30%), Positives = 22/33 (66%)
 Frame = +3

Query: 540 GEFIIFEYQQRRMVVALEKSSRSPRNVIVRRSL 638
           G+  +F+Y +R   + +EKSS+  RN++  +++
Sbjct: 64  GKCTVFDYIRRPKSLKVEKSSKDERNIVYFKTI 96


>Z82057-2|CAD89759.1|  561|Caenorhabditis elegans Hypothetical
           protein T26H8.4 protein.
          Length = 561

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 18/63 (28%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
 Frame = +1

Query: 175 METVSAVFIGGFLLVLGTTQIVIYK-SHATEVMDV-RSSKLFGVQMFFTLLVPVLAVIRF 348
           M+T+S +   GF+LVLG  Q++  K  H +  +   +S+ +  + +F  ++  V   I F
Sbjct: 381 MDTLSTLK-SGFMLVLGGVQLIFVKYPHGSWTISFSKSTVILQMSIFVAIVSSVAHFISF 439

Query: 349 LLQ 357
           L +
Sbjct: 440 LFE 442


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,040,858
Number of Sequences: 27780
Number of extensions: 416449
Number of successful extensions: 896
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 863
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 896
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1645110168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)