Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc9m12
         (708 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    25   0.70 
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    25   0.70 
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    25   0.93 
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    23   2.1  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    22   6.6  
AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.           22   6.6  
AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.           22   6.6  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    22   6.6  
DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein ...    21   8.7  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    21   8.7  
AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein ...    21   8.7  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    21   8.7  

>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 25.0 bits (52), Expect = 0.70
 Identities = 29/131 (22%), Positives = 55/131 (41%), Gaps = 12/131 (9%)
 Frame = +1

Query: 181 TVSAVFIGGFLLVLGTTQIVIYKSHATEVMDVRSSKLFGVQMFFTLLVPVLAVIRFLLQA 360
           T+  + I   ++VLG   +++   H +++ +V  + +F V +    L+  LAV+ F    
Sbjct: 68  TLIVLAIVNVMVVLGNVLVILAVYHTSKLRNV--TNMFIVSLAVADLMVGLAVLPFSATW 125

Query: 361 LLFKSGCVYG------------YMVVALTVTLVVFPLSAYLAILERRFLLPSVPPRGHGF 504
            +FK   ++G            +M  A  + L    L  YLA+         + PR    
Sbjct: 126 EVFKVW-IFGDLWCSIWLAVDVWMCTASILNLCAISLDRYLAVTRPVSYPQIMSPRRARL 184

Query: 505 VLLVFWAMIFV 537
           ++   W + FV
Sbjct: 185 LVATVWILSFV 195


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 25.0 bits (52), Expect = 0.70
 Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
 Frame = +1

Query: 289 LFGVQMFFTLLVPVLAVIR--FLLQALLFKSGCVYGYMVVALTVTLVVFPLSAYLAILER 462
           LF V   F   + +LAV+R  +L  A  +    V         V LVV P SA   +LE 
Sbjct: 54  LFSVATVFGNTLVILAVVRERYLHTATNY---FVTSLAFADCLVGLVVMPFSAIYEVLEN 110

Query: 463 RFL 471
           R+L
Sbjct: 111 RWL 113


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 24.6 bits (51), Expect = 0.93
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = +3

Query: 300 SDVFYSFSTSVGCNKVSVTSIIVQKWLCVWLYGS 401
           S + Y   TS+     S  +I+++K   +W Y S
Sbjct: 290 SQLEYDLQTSIMSRHYSTRAIVIEKGQSIWDYDS 323


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 13/31 (41%), Positives = 15/31 (48%), Gaps = 3/31 (9%)
 Frame = +1

Query: 619 SLFV---GRYVSCMIMFVLGMKAPGIMHHFD 702
           S+FV   G Y    I FV GMK     HH +
Sbjct: 173 SMFVHTFGAYFGLAISFVFGMKEKRKEHHLE 203


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 7/23 (30%), Positives = 14/23 (60%)
 Frame = +2

Query: 206 DSYWSWEPHKLLFTKAMPLR*WM 274
           ++Y+ W P K++  K +P   W+
Sbjct: 143 NNYYIWHPGKIVNGKRVPPTNWV 165


>AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.
          Length = 136

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = +3

Query: 633 SLRVVYDNVRARYEGA 680
           + RVV DN++ R++GA
Sbjct: 3   NFRVVGDNLKDRFDGA 18


>AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.
          Length = 135

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = +3

Query: 633 SLRVVYDNVRARYEGA 680
           + RVV DN++ R++GA
Sbjct: 4   NFRVVGDNLKDRFDGA 19


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 7/23 (30%), Positives = 14/23 (60%)
 Frame = +2

Query: 206 DSYWSWEPHKLLFTKAMPLR*WM 274
           ++Y+ W P K++  K +P   W+
Sbjct: 143 NNYYIWHPGKIVNGKRVPPTNWV 165


>DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein 1
           protein.
          Length = 116

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 9/26 (34%), Positives = 12/26 (46%)
 Frame = +1

Query: 226 TTQIVIYKSHATEVMDVRSSKLFGVQ 303
           T   V +KSH TE    +  K   +Q
Sbjct: 57  TPDSVFFKSHITEAFQTQCKKCTEIQ 82


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +2

Query: 467 SYYRPCLLEVTVLYSWFFGL 526
           S+Y PC++ V + Y+ F  L
Sbjct: 351 SFYIPCIIMVFLYYNIFKAL 370


>AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein
           protein.
          Length = 116

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 9/26 (34%), Positives = 12/26 (46%)
 Frame = +1

Query: 226 TTQIVIYKSHATEVMDVRSSKLFGVQ 303
           T   V +KSH TE    +  K   +Q
Sbjct: 57  TPDSVFFKSHITEAFQTQCKKCTEIQ 82


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = -1

Query: 675 LHTEHEHYHTRHVTTDEQ 622
           LH  ++HYH   V T ++
Sbjct: 4   LHIHYQHYHITPVFTKQK 21


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 224,485
Number of Sequences: 438
Number of extensions: 5247
Number of successful extensions: 18
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21804885
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)