Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc9m05
(348 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q82484 Cluster: Very late expression factor 1; n=31; Nu... 82 3e-15
UniRef50_Q06690 Cluster: Uncharacterized 9.4 kDa protein in IAP2... 59 2e-08
UniRef50_Q6QXL7 Cluster: ORF97; n=10; Granulovirus|Rep: ORF97 - ... 52 4e-06
UniRef50_Q6JPC6 Cluster: Very late factor-1; n=3; Nucleopolyhedr... 42 0.002
UniRef50_Q6M017 Cluster: Phage integrase; n=4; Methanococcus|Rep... 37 0.083
UniRef50_Q6TFH6 Cluster: Putative site-specific recombinase; n=1... 37 0.11
UniRef50_A6F6W3 Cluster: Putative uncharacterized protein; n=1; ... 37 0.11
UniRef50_Q2LUZ2 Cluster: Integrase; n=1; Syntrophus aciditrophic... 36 0.25
UniRef50_A5I4D7 Cluster: Phage integrase; n=1; Clostridium botul... 36 0.25
UniRef50_A1BYV7 Cluster: Phage integrase family protein; n=5; Ba... 35 0.44
UniRef50_A0UXA5 Cluster: Phage integrase; n=1; Clostridium cellu... 35 0.44
UniRef50_A7AG98 Cluster: Putative uncharacterized protein; n=1; ... 34 0.59
UniRef50_Q30Q36 Cluster: Phage integrase; n=1; Thiomicrospira de... 34 0.77
UniRef50_A4ADH6 Cluster: Phage integrase family protein; n=1; Co... 34 0.77
UniRef50_Q9EX39 Cluster: Integrase; n=2; Streptomyces coelicolor... 33 1.0
UniRef50_Q81WA7 Cluster: Prophage LambdaBa02, site-specific reco... 33 1.0
UniRef50_A6D7I2 Cluster: Site-specific recombinase XerD-like pro... 33 1.0
UniRef50_A5VK85 Cluster: Phage integrase family protein; n=2; La... 33 1.0
UniRef50_A5CFM6 Cluster: Tyrosine recombinase XerC; n=1; Orienti... 33 1.0
UniRef50_Q7ZAM5 Cluster: Tyrosine recombinase xerC; n=32; Bacill... 33 1.0
UniRef50_Q8A4X8 Cluster: Integrase; n=1; Bacteroides thetaiotaom... 33 1.4
UniRef50_Q8A3G4 Cluster: Putative uncharacterized protein; n=1; ... 33 1.4
UniRef50_A1UDK0 Cluster: Phage integrase family protein; n=6; Ac... 33 1.4
UniRef50_A1SBX6 Cluster: Phage integrase family protein; n=4; Ac... 33 1.4
UniRef50_A6GYU9 Cluster: Tyrosine recombinase XerC; n=8; Bactero... 33 1.8
UniRef50_A1TQR1 Cluster: Phage integrase family protein; n=2; Co... 33 1.8
UniRef50_Q72B79 Cluster: Site-specific recombinase, phage integr... 32 2.4
UniRef50_Q30VV4 Cluster: Site-specific recombinase, phage integr... 32 2.4
UniRef50_Q0AYZ2 Cluster: Putative integrase; n=1; Syntrophomonas... 32 2.4
UniRef50_A6PNW4 Cluster: Phage integrase family protein; n=1; Vi... 32 2.4
UniRef50_Q1IK38 Cluster: Phage integrase; n=1; Acidobacteria bac... 32 3.1
UniRef50_A7AGR7 Cluster: Putative uncharacterized protein; n=1; ... 32 3.1
UniRef50_A5FTE7 Cluster: Phage integrase family protein; n=4; Al... 32 3.1
UniRef50_Q3E6B4 Cluster: Phage integrase; n=2; Chloroflexus|Rep:... 31 4.1
UniRef50_Q121T3 Cluster: Phage integrase; n=2; Polaromonas sp. J... 31 4.1
UniRef50_Q0RV95 Cluster: Probable integrase/recombinase, XerC an... 31 4.1
UniRef50_A4CM29 Cluster: Tyrosine type site-specific recombinase... 31 4.1
UniRef50_Q554S2 Cluster: Colossin B; n=4; Eukaryota|Rep: Colossi... 31 4.1
UniRef50_Q2ESR3 Cluster: Integrase/recombinase; n=1; Bacillus th... 31 5.5
UniRef50_Q1QB06 Cluster: Phage integrase; n=1; Psychrobacter cry... 31 5.5
UniRef50_A3XPY7 Cluster: Tyrosine type site-specific recombinase... 31 5.5
UniRef50_A3J832 Cluster: Probable integrase/recombinase; n=1; Ma... 31 5.5
UniRef50_A1ICU9 Cluster: Integrase; n=1; Candidatus Desulfococcu... 31 5.5
UniRef50_A1GBU0 Cluster: Putative uncharacterized protein; n=1; ... 31 5.5
UniRef50_Q332C2 Cluster: XerC/D family recombinase; n=1; Clostri... 31 5.5
UniRef50_P0A055 Cluster: Transposase B from transposon Tn554; n=... 31 5.5
UniRef50_Q5SJN4 Cluster: Integrase/recombinase; n=2; Thermus the... 31 7.2
UniRef50_A0LFM3 Cluster: Phage integrase family protein; n=1; Sy... 31 7.2
UniRef50_Q8I2T7 Cluster: Putative uncharacterized protein PFI106... 31 7.2
UniRef50_Q72A00 Cluster: Site-specific recombinase, phage integr... 30 9.5
UniRef50_Q5WFP9 Cluster: Site-specific tyrosine recombinase; n=1... 30 9.5
UniRef50_Q58WR8 Cluster: Integrase; n=2; uncultured murine large... 30 9.5
UniRef50_Q3R024 Cluster: Phage integrase; n=3; Xylella fastidios... 30 9.5
UniRef50_Q144A9 Cluster: Putative bacteriophage integrase; n=1; ... 30 9.5
UniRef50_A5D2W6 Cluster: Site-specific recombinase XerD; n=4; Cl... 30 9.5
UniRef50_A0M400 Cluster: Tyrosine recombinase XerC; n=4; Flavoba... 30 9.5
UniRef50_P55632 Cluster: Putative integrase/recombinase y4qK; n=... 30 9.5
UniRef50_P18021 Cluster: Resolvase; n=34; root|Rep: Resolvase - ... 30 9.5
>UniRef50_Q82484 Cluster: Very late expression factor 1; n=31;
Nucleopolyhedrovirus|Rep: Very late expression factor 1
- Heliothis zea nuclear polyhedrosis virus (HzSNPV)
(Helicoverpa zeasingle nucleocapsid nuclear polyhedrosis
virus)
Length = 415
Score = 81.8 bits (193), Expect = 3e-15
Identities = 34/41 (82%), Positives = 41/41 (100%)
Frame = +3
Query: 3 RHYLSSNLYNSGVPLQKVAKLMNHESSASTKHYLNKYNIGL 125
RHYLSSNLYN+G+PLQKVA+LMNHESSAST+HYLNKY++G+
Sbjct: 307 RHYLSSNLYNNGMPLQKVARLMNHESSASTRHYLNKYDVGV 347
>UniRef50_Q06690 Cluster: Uncharacterized 9.4 kDa protein in
IAP2-VLF1 intergenic region; n=12;
Nucleopolyhedrovirus|Rep: Uncharacterized 9.4 kDa
protein in IAP2-VLF1 intergenic region - Autographa
californica nuclear polyhedrosis virus (AcMNPV)
Length = 84
Score = 59.3 bits (137), Expect = 2e-08
Identities = 28/29 (96%), Positives = 28/29 (96%)
Frame = +3
Query: 252 MNLYLLLGALTIFSLVYDKKENSIFLYLL 338
MNLYLLLGAL IFSLVYDKKENSIFLYLL
Sbjct: 1 MNLYLLLGALAIFSLVYDKKENSIFLYLL 29
>UniRef50_Q6QXL7 Cluster: ORF97; n=10; Granulovirus|Rep: ORF97 -
Agrotis segetum granulosis virus (AsGV) (Agrotis
segetumgranulovirus)
Length = 382
Score = 51.6 bits (118), Expect = 4e-06
Identities = 20/40 (50%), Positives = 30/40 (75%)
Frame = +3
Query: 3 RHYLSSNLYNSGVPLQKVAKLMNHESSASTKHYLNKYNIG 122
R+Y++ + NSG+ L K +KLMNH S +TKHY+NK++ G
Sbjct: 318 RNYVADTILNSGLSLNKTSKLMNHRSVTATKHYINKFHPG 357
>UniRef50_Q6JPC6 Cluster: Very late factor-1; n=3;
Nucleopolyhedrovirus|Rep: Very late factor-1 -
Neodiprion lecontii NPV
Length = 354
Score = 42.3 bits (95), Expect = 0.002
Identities = 18/41 (43%), Positives = 28/41 (68%), Gaps = 1/41 (2%)
Frame = +3
Query: 3 RHYLSSNLYNSGVPLQKVAKLMNHESSASTKHYLN-KYNIG 122
RH L+S ++N VPL +++ MNH + ST+ Y+N KY+ G
Sbjct: 306 RHMLASQMFNEAVPLTTISEYMNHNAVNSTRSYINRKYHRG 346
>UniRef50_Q6M017 Cluster: Phage integrase; n=4; Methanococcus|Rep:
Phage integrase - Methanococcus maripaludis
Length = 182
Score = 37.1 bits (82), Expect = 0.083
Identities = 15/28 (53%), Positives = 21/28 (75%)
Frame = +3
Query: 21 NLYNSGVPLQKVAKLMNHESSASTKHYL 104
+L N GVPL+KV+K + H+S +T HYL
Sbjct: 135 HLLNDGVPLEKVSKYLRHKSINTTMHYL 162
>UniRef50_Q6TFH6 Cluster: Putative site-specific recombinase; n=1;
Caedibacter taeniospiralis|Rep: Putative site-specific
recombinase - Caedibacter taeniospiralis
Length = 282
Score = 36.7 bits (81), Expect = 0.11
Identities = 17/33 (51%), Positives = 21/33 (63%)
Frame = +3
Query: 3 RHYLSSNLYNSGVPLQKVAKLMNHESSASTKHY 101
RH NL N+GV L+KVA L HE+ +TK Y
Sbjct: 239 RHTFCKNLVNAGVSLEKVAVLAGHETLETTKIY 271
>UniRef50_A6F6W3 Cluster: Putative uncharacterized protein; n=1;
Moritella sp. PE36|Rep: Putative uncharacterized protein
- Moritella sp. PE36
Length = 401
Score = 36.7 bits (81), Expect = 0.11
Identities = 15/33 (45%), Positives = 23/33 (69%)
Frame = +3
Query: 3 RHYLSSNLYNSGVPLQKVAKLMNHESSASTKHY 101
RH ++SNL ++GV + V KL+NH+ +ST Y
Sbjct: 347 RHSVASNLISNGVDISSVQKLLNHKDISSTLRY 379
>UniRef50_Q2LUZ2 Cluster: Integrase; n=1; Syntrophus aciditrophicus
SB|Rep: Integrase - Syntrophus aciditrophicus (strain
SB)
Length = 334
Score = 35.5 bits (78), Expect = 0.25
Identities = 15/34 (44%), Positives = 21/34 (61%)
Frame = +3
Query: 3 RHYLSSNLYNSGVPLQKVAKLMNHESSASTKHYL 104
RHY +S L NSGVP+ + L+ H+ +T YL
Sbjct: 268 RHYGASRLANSGVPITDIQALLGHQRPTTTDIYL 301
>UniRef50_A5I4D7 Cluster: Phage integrase; n=1; Clostridium
botulinum A str. ATCC 3502|Rep: Phage integrase -
Clostridium botulinum A str. ATCC 3502
Length = 331
Score = 35.5 bits (78), Expect = 0.25
Identities = 17/41 (41%), Positives = 27/41 (65%), Gaps = 2/41 (4%)
Frame = +3
Query: 3 RHYLSSNLYNSGVPLQKVAKLMNHESSASTKHY--LNKYNI 119
RH ++N N+G+P+ + LM HES A+T+ Y L++ NI
Sbjct: 283 RHSFATNKLNAGMPMPVIQHLMGHESPATTQIYAELSEENI 323
>UniRef50_A1BYV7 Cluster: Phage integrase family protein; n=5;
Bacillus cereus group|Rep: Phage integrase family
protein - Bacillus cereus
Length = 319
Score = 34.7 bits (76), Expect = 0.44
Identities = 13/36 (36%), Positives = 23/36 (63%)
Frame = +3
Query: 3 RHYLSSNLYNSGVPLQKVAKLMNHESSASTKHYLNK 110
RH+ +++L GV L+K+ + HES +T+ YL +
Sbjct: 267 RHFFANHLMGKGVELKKIRDYLGHESIMTTERYLRE 302
>UniRef50_A0UXA5 Cluster: Phage integrase; n=1; Clostridium
cellulolyticum H10|Rep: Phage integrase - Clostridium
cellulolyticum H10
Length = 517
Score = 34.7 bits (76), Expect = 0.44
Identities = 11/33 (33%), Positives = 22/33 (66%)
Frame = +3
Query: 3 RHYLSSNLYNSGVPLQKVAKLMNHESSASTKHY 101
RH+ + + G+P+Q ++K++NH+S T+ Y
Sbjct: 338 RHFFAQGAWKGGMPVQFISKMLNHDSLVMTETY 370
>UniRef50_A7AG98 Cluster: Putative uncharacterized protein; n=1;
Parabacteroides merdae ATCC 43184|Rep: Putative
uncharacterized protein - Parabacteroides merdae ATCC
43184
Length = 310
Score = 34.3 bits (75), Expect = 0.59
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = +3
Query: 3 RHYLSSNLYNSGVPLQKVAKLMNHESSASTKHY 101
RH + +G+P++ +AK+M H S AST+ Y
Sbjct: 262 RHSFGTLTLEAGIPIESIAKMMGHSSIASTQIY 294
>UniRef50_Q30Q36 Cluster: Phage integrase; n=1; Thiomicrospira
denitrificans ATCC 33889|Rep: Phage integrase -
Thiomicrospira denitrificans (strain ATCC 33889 / DSM
1351)
Length = 150
Score = 33.9 bits (74), Expect = 0.77
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +3
Query: 3 RHYLSSNLYNSGVPLQKVAKLMNHESSASTKHYLNK 110
RH L L N+ VPL+ ++K + H +T+ Y N+
Sbjct: 97 RHLLGFTLVNNNVPLEYISKALGHSKITTTQRYSNQ 132
>UniRef50_A4ADH6 Cluster: Phage integrase family protein; n=1;
Congregibacter litoralis KT71|Rep: Phage integrase
family protein - Congregibacter litoralis KT71
Length = 186
Score = 33.9 bits (74), Expect = 0.77
Identities = 13/27 (48%), Positives = 20/27 (74%)
Frame = +3
Query: 24 LYNSGVPLQKVAKLMNHESSASTKHYL 104
+Y+ GVP++ V+K++NH S A T YL
Sbjct: 144 MYSDGVPVEMVSKVLNHSSPAVTMTYL 170
>UniRef50_Q9EX39 Cluster: Integrase; n=2; Streptomyces
coelicolor|Rep: Integrase - Streptomyces coelicolor
Length = 370
Score = 33.5 bits (73), Expect = 1.0
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +3
Query: 3 RHYLSSNLYNSGVPLQKVAKLMNHESSAST 92
RHY +SN +G+P+ VA+ M H+S T
Sbjct: 314 RHYFASNALGNGIPITDVAEWMGHKSIEET 343
>UniRef50_Q81WA7 Cluster: Prophage LambdaBa02, site-specific
recombinase, phage integrase family; n=1; Bacillus
anthracis|Rep: Prophage LambdaBa02, site-specific
recombinase, phage integrase family - Bacillus anthracis
Length = 325
Score = 33.5 bits (73), Expect = 1.0
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = +3
Query: 3 RHYLSSNLYNSGVPLQKVAKLMNHESSASTKHYL 104
RH NL GVPL+K+ L NH ++T+ YL
Sbjct: 268 RHSRLDNLKVQGVPLEKLKSLANHSDISTTQSYL 301
>UniRef50_A6D7I2 Cluster: Site-specific recombinase XerD-like
protein; n=1; Vibrio shilonii AK1|Rep: Site-specific
recombinase XerD-like protein - Vibrio shilonii AK1
Length = 413
Score = 33.5 bits (73), Expect = 1.0
Identities = 16/40 (40%), Positives = 24/40 (60%)
Frame = +3
Query: 3 RHYLSSNLYNSGVPLQKVAKLMNHESSASTKHYLNKYNIG 122
RH + S L + GV L +AK +NH +ST+ Y +K +G
Sbjct: 353 RHTVGSLLASQGVSLHDIAKQLNHADLSSTRRY-SKLTVG 391
>UniRef50_A5VK85 Cluster: Phage integrase family protein; n=2;
Lactobacillus reuteri|Rep: Phage integrase family
protein - Lactobacillus reuteri F275
Length = 215
Score = 33.5 bits (73), Expect = 1.0
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +3
Query: 3 RHYLSSNLYNSGVPLQKVAKLMNHESSASTKHYL 104
R LY GV ++ +++L NH S +T+HYL
Sbjct: 165 RKTFGRQLYKKGVNVEIISQLFNHSSERNTRHYL 198
>UniRef50_A5CFM6 Cluster: Tyrosine recombinase XerC; n=1; Orientia
tsutsugamushi Boryong|Rep: Tyrosine recombinase XerC -
Orientia tsutsugamushi (strain Boryong) (Rickettsia
tsutsugamushi)
Length = 312
Score = 33.5 bits (73), Expect = 1.0
Identities = 13/33 (39%), Positives = 23/33 (69%)
Frame = +3
Query: 3 RHYLSSNLYNSGVPLQKVAKLMNHESSASTKHY 101
RH +S+L N+G L+ + +L+ H+S +ST+ Y
Sbjct: 254 RHCFASHLLNNGADLRSIQELLGHQSLSSTQIY 286
>UniRef50_Q7ZAM5 Cluster: Tyrosine recombinase xerC; n=32;
Bacillales|Rep: Tyrosine recombinase xerC -
Oceanobacillus iheyensis
Length = 305
Score = 33.5 bits (73), Expect = 1.0
Identities = 14/33 (42%), Positives = 22/33 (66%)
Frame = +3
Query: 3 RHYLSSNLYNSGVPLQKVAKLMNHESSASTKHY 101
RH +++L N G L+ V +L+ HES +ST+ Y
Sbjct: 249 RHTFATHLLNEGADLRSVQELLGHESLSSTQIY 281
>UniRef50_Q8A4X8 Cluster: Integrase; n=1; Bacteroides
thetaiotaomicron|Rep: Integrase - Bacteroides
thetaiotaomicron
Length = 86
Score = 33.1 bits (72), Expect = 1.4
Identities = 12/33 (36%), Positives = 22/33 (66%)
Frame = +3
Query: 3 RHYLSSNLYNSGVPLQKVAKLMNHESSASTKHY 101
RH + + +SG+P++ +AK+M H + ST+ Y
Sbjct: 53 RHSFGTLMLSSGIPIESIAKMMGHTNINSTQVY 85
>UniRef50_Q8A3G4 Cluster: Putative uncharacterized protein; n=1;
Bacteroides thetaiotaomicron|Rep: Putative
uncharacterized protein - Bacteroides thetaiotaomicron
Length = 488
Score = 33.1 bits (72), Expect = 1.4
Identities = 15/43 (34%), Positives = 27/43 (62%), Gaps = 2/43 (4%)
Frame = +3
Query: 3 RHYLSSNLYNSGVPLQKVAKLMNHESS--ASTKHYLNKYNIGL 125
RH ++NL+N+GV + +++ M H SS A T+ Y+ Y + +
Sbjct: 409 RHSFATNLHNAGVDMDYISESMGHASSDHAITQIYIEHYPLDI 451
>UniRef50_A1UDK0 Cluster: Phage integrase family protein; n=6;
Actinomycetales|Rep: Phage integrase family protein -
Mycobacterium sp. (strain KMS)
Length = 737
Score = 33.1 bits (72), Expect = 1.4
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +3
Query: 3 RHYLSSNLYNSGVPLQKVAKLMNHESSASTKHY 101
RH L + L N VP + V ++++H+S T HY
Sbjct: 571 RHTLGTRLINRDVPQEVVRRILDHDSPQMTAHY 603
>UniRef50_A1SBX6 Cluster: Phage integrase family protein; n=4;
Actinomycetales|Rep: Phage integrase family protein -
Nocardioides sp. (strain BAA-499 / JS614)
Length = 375
Score = 33.1 bits (72), Expect = 1.4
Identities = 12/35 (34%), Positives = 23/35 (65%)
Frame = +3
Query: 3 RHYLSSNLYNSGVPLQKVAKLMNHESSASTKHYLN 107
RHY +S+LY G+ L+ + +L+ H ++T Y++
Sbjct: 302 RHYCASHLYEQGMTLKAIQELLGHGWLSTTTQYIH 336
>UniRef50_A6GYU9 Cluster: Tyrosine recombinase XerC; n=8;
Bacteroidetes|Rep: Tyrosine recombinase XerC -
Flavobacterium psychrophilum (strain JIP02/86 / ATCC
49511)
Length = 298
Score = 32.7 bits (71), Expect = 1.8
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +3
Query: 3 RHYLSSNLYNSGVPLQKVAKLMNHESSASTKHYLN 107
RH ++++ N G L + +L+ H S AST+ Y N
Sbjct: 245 RHTFATHMLNHGADLNSIKELLGHSSLASTQVYTN 279
>UniRef50_A1TQR1 Cluster: Phage integrase family protein; n=2;
Comamonadaceae|Rep: Phage integrase family protein -
Acidovorax avenae subsp. citrulli (strain AAC00-1)
Length = 352
Score = 32.7 bits (71), Expect = 1.8
Identities = 13/37 (35%), Positives = 23/37 (62%)
Frame = +3
Query: 3 RHYLSSNLYNSGVPLQKVAKLMNHESSASTKHYLNKY 113
RH +S+LY PL+ + L+ HE A+T Y++++
Sbjct: 278 RHAFASHLYQHKAPLKTIQLLLGHEHLATTTIYVSRH 314
>UniRef50_Q72B79 Cluster: Site-specific recombinase, phage integrase
family; n=1; Desulfovibrio vulgaris subsp. vulgaris str.
Hildenborough|Rep: Site-specific recombinase, phage
integrase family - Desulfovibrio vulgaris (strain
Hildenborough / ATCC 29579 / NCIMB8303)
Length = 373
Score = 32.3 bits (70), Expect = 2.4
Identities = 16/33 (48%), Positives = 17/33 (51%)
Frame = +3
Query: 3 RHYLSSNLYNSGVPLQKVAKLMNHESSASTKHY 101
RH S L GVPL +A LM H S TK Y
Sbjct: 314 RHTFGSWLAQRGVPLYTIAVLMGHSSLEMTKRY 346
>UniRef50_Q30VV4 Cluster: Site-specific recombinase, phage integrase
family; n=1; Desulfovibrio desulfuricans G20|Rep:
Site-specific recombinase, phage integrase family -
Desulfovibrio desulfuricans (strain G20)
Length = 407
Score = 32.3 bits (70), Expect = 2.4
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +3
Query: 3 RHYLSSNLYNSGVPLQKVAKLMNHESSASTKHY 101
RH +S L +G PL V +L+ H S A T+ Y
Sbjct: 360 RHTFASRLVANGTPLYNVKELLGHSSLAMTERY 392
>UniRef50_Q0AYZ2 Cluster: Putative integrase; n=1; Syntrophomonas
wolfei subsp. wolfei str. Goettingen|Rep: Putative
integrase - Syntrophomonas wolfei subsp. wolfei (strain
Goettingen)
Length = 171
Score = 32.3 bits (70), Expect = 2.4
Identities = 12/35 (34%), Positives = 24/35 (68%)
Frame = +3
Query: 3 RHYLSSNLYNSGVPLQKVAKLMNHESSASTKHYLN 107
RH L++N+ + V + ++ +M H+S+ +TK YL+
Sbjct: 111 RHSLATNMLKNNVSMPVISTVMGHQSTETTKIYLS 145
>UniRef50_A6PNW4 Cluster: Phage integrase family protein; n=1;
Victivallis vadensis ATCC BAA-548|Rep: Phage integrase
family protein - Victivallis vadensis ATCC BAA-548
Length = 260
Score = 32.3 bits (70), Expect = 2.4
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +3
Query: 3 RHYLSSNLYNSGVPLQKVAKLMNHESSASTKHY 101
RH S N+GVP+ V +++ H S A T+HY
Sbjct: 85 RHSFVSFCANAGVPMAIVQEIVGHGSPAMTRHY 117
>UniRef50_Q1IK38 Cluster: Phage integrase; n=1; Acidobacteria
bacterium Ellin345|Rep: Phage integrase - Acidobacteria
bacterium (strain Ellin345)
Length = 379
Score = 31.9 bits (69), Expect = 3.1
Identities = 14/37 (37%), Positives = 23/37 (62%)
Frame = +3
Query: 3 RHYLSSNLYNSGVPLQKVAKLMNHESSASTKHYLNKY 113
R + +L GVPL++V+KL+ HES +T+ K+
Sbjct: 325 RDTFACDLLQKGVPLEEVSKLLGHESIKTTERSYAKW 361
>UniRef50_A7AGR7 Cluster: Putative uncharacterized protein; n=1;
Parabacteroides merdae ATCC 43184|Rep: Putative
uncharacterized protein - Parabacteroides merdae ATCC
43184
Length = 116
Score = 31.9 bits (69), Expect = 3.1
Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Frame = +3
Query: 3 RH-YLSSNLYNSGVPLQKVAKLMNHESSASTKHY 101
RH Y +S +GV ++ VAK++ H ++ TKHY
Sbjct: 59 RHSYATSICLANGVSMENVAKMLGHADTSVTKHY 92
>UniRef50_A5FTE7 Cluster: Phage integrase family protein; n=4;
Alphaproteobacteria|Rep: Phage integrase family protein
- Acidiphilium cryptum (strain JF-5)
Length = 403
Score = 31.9 bits (69), Expect = 3.1
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +3
Query: 3 RHYLSSNLYNSGVPLQKVAKLMNHESSASTKHY 101
RH L++ L NSG L +V ++ H S ST Y
Sbjct: 349 RHSLATQLVNSGASLDEVGDVLRHRSRTSTMIY 381
>UniRef50_Q3E6B4 Cluster: Phage integrase; n=2; Chloroflexus|Rep:
Phage integrase - Chloroflexus aurantiacus J-10-fl
Length = 383
Score = 31.5 bits (68), Expect = 4.1
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = +3
Query: 3 RHYLSSNLYNSGVPLQKVAKLMNHESSASTKHYLNKY 113
RH++ +L N GV L +V++++ H S T+ + Y
Sbjct: 326 RHFVGYHLLNEGVSLAEVSQILRHRSVEVTRSFYASY 362
>UniRef50_Q121T3 Cluster: Phage integrase; n=2; Polaromonas sp.
JS666|Rep: Phage integrase - Polaromonas sp. (strain
JS666 / ATCC BAA-500)
Length = 291
Score = 31.5 bits (68), Expect = 4.1
Identities = 12/35 (34%), Positives = 22/35 (62%)
Frame = +3
Query: 3 RHYLSSNLYNSGVPLQKVAKLMNHESSASTKHYLN 107
RH +++L SGV L +++L+ H ++T YL+
Sbjct: 233 RHCFATHLLESGVDLYTISRLLGHRHISTTSRYLH 267
>UniRef50_Q0RV95 Cluster: Probable integrase/recombinase, XerC and
XerD family; n=1; Rhodococcus sp. RHA1|Rep: Probable
integrase/recombinase, XerC and XerD family -
Rhodococcus sp. (strain RHA1)
Length = 376
Score = 31.5 bits (68), Expect = 4.1
Identities = 14/35 (40%), Positives = 22/35 (62%)
Frame = +3
Query: 3 RHYLSSNLYNSGVPLQKVAKLMNHESSASTKHYLN 107
RH +SNL +SG L ++ L+ H S++S YL+
Sbjct: 318 RHGFASNLADSGALLDEIQGLLGHASASSATPYLH 352
>UniRef50_A4CM29 Cluster: Tyrosine type site-specific recombinase;
n=1; Robiginitalea biformata HTCC2501|Rep: Tyrosine type
site-specific recombinase - Robiginitalea biformata
HTCC2501
Length = 423
Score = 31.5 bits (68), Expect = 4.1
Identities = 13/39 (33%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Frame = +3
Query: 3 RHYLSSNL-YNSGVPLQKVAKLMNHESSASTKHYLNKYN 116
RH ++ + ++GVP++ V KL+ H + +T+HY N
Sbjct: 350 RHTFATTVTLSNGVPIETVGKLLGHRNLRATQHYAKIVN 388
>UniRef50_Q554S2 Cluster: Colossin B; n=4; Eukaryota|Rep: Colossin B -
Dictyostelium discoideum AX4
Length = 3763
Score = 31.5 bits (68), Expect = 4.1
Identities = 14/35 (40%), Positives = 23/35 (65%)
Frame = +3
Query: 243 GIKMNLYLLLGALTIFSLVYDKKENSIFLYLLKKK 347
G K++L + T++ L YD+KEN+I+L KK+
Sbjct: 3246 GQKVDLVTMSETKTVYGLGYDRKENTIYLSPYKKQ 3280
>UniRef50_Q2ESR3 Cluster: Integrase/recombinase; n=1; Bacillus
thuringiensis|Rep: Integrase/recombinase - Bacillus
thuringiensis
Length = 314
Score = 31.1 bits (67), Expect = 5.5
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +3
Query: 3 RHYLSSNLYNSGVPLQKVAKLMNHESSASTKHYL 104
RH +L G+P+ VA+LM H +TK Y+
Sbjct: 260 RHTFGHDLVQKGIPISYVAELMGHTDINTTKIYV 293
>UniRef50_Q1QB06 Cluster: Phage integrase; n=1; Psychrobacter
cryohalolentis K5|Rep: Phage integrase - Psychrobacter
cryohalolentis (strain K5)
Length = 526
Score = 31.1 bits (67), Expect = 5.5
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +3
Query: 3 RHYLSSNLYNSGVPLQKVAKLMNHESSASTKHYL 104
RH + +L +G ++VA +M H S + KHY+
Sbjct: 344 RHNVGHSLAMTGASAEEVAHIMGHNSLVAAKHYI 377
>UniRef50_A3XPY7 Cluster: Tyrosine type site-specific recombinase;
n=2; Flavobacteriaceae|Rep: Tyrosine type site-specific
recombinase - Leeuwenhoekiella blandensis MED217
Length = 414
Score = 31.1 bits (67), Expect = 5.5
Identities = 11/34 (32%), Positives = 24/34 (70%), Gaps = 1/34 (2%)
Frame = +3
Query: 3 RHYLSSNL-YNSGVPLQKVAKLMNHESSASTKHY 101
RH ++ + +GVP++ V++++ H+S +T+HY
Sbjct: 350 RHTFATTVTLTNGVPIETVSRMLGHQSLRTTQHY 383
>UniRef50_A3J832 Cluster: Probable integrase/recombinase; n=1;
Marinobacter sp. ELB17|Rep: Probable
integrase/recombinase - Marinobacter sp. ELB17
Length = 403
Score = 31.1 bits (67), Expect = 5.5
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +3
Query: 3 RHYLSSNLYNSGVPLQKVAKLMNHESSASTKHYLN 107
RH +S L +G PL ++ ++ H S ST YL+
Sbjct: 348 RHNAASKLLRAGTPLPTISAVLGHSSPDSTNVYLS 382
>UniRef50_A1ICU9 Cluster: Integrase; n=1; Candidatus Desulfococcus
oleovorans Hxd3|Rep: Integrase - Candidatus
Desulfococcus oleovorans Hxd3
Length = 397
Score = 31.1 bits (67), Expect = 5.5
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = +3
Query: 3 RHYLSSNLYNSGVPLQKVAKLMNHESSASTKHY 101
RH+ +S L ++G L V L+ H+S+A T+ Y
Sbjct: 333 RHHFASALVSAGTNLYTVQALLTHKSAAMTQRY 365
>UniRef50_A1GBU0 Cluster: Putative uncharacterized protein; n=1;
Salinispora arenicola CNS205|Rep: Putative
uncharacterized protein - Salinispora arenicola CNS205
Length = 188
Score = 31.1 bits (67), Expect = 5.5
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = +3
Query: 3 RHYLSSNLYNSGVPLQKVAKLMNHESSASTKHY 101
RH L++ +G+PL+ V M H+ + +HY
Sbjct: 78 RHALATGSRQAGIPLEDVQDAMGHDDPRTARHY 110
>UniRef50_Q332C2 Cluster: XerC/D family recombinase; n=1;
Clostridium phage c-st|Rep: XerC/D family recombinase -
Clostridium botulinum C bacteriophage
Length = 317
Score = 31.1 bits (67), Expect = 5.5
Identities = 13/36 (36%), Positives = 24/36 (66%)
Frame = +3
Query: 3 RHYLSSNLYNSGVPLQKVAKLMNHESSASTKHYLNK 110
RH ++ L N+G+P+++V+ L++HE TK + K
Sbjct: 266 RHSGATLLKNAGMPIERVSSLLHHEGLDVTKKFYIK 301
>UniRef50_P0A055 Cluster: Transposase B from transposon Tn554; n=17;
Staphylococcus|Rep: Transposase B from transposon Tn554
- Staphylococcus aureus
Length = 630
Score = 31.1 bits (67), Expect = 5.5
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +3
Query: 3 RHYLSSNLYNSGVPLQKVAKLMNHESSASTKHYLNKYN 116
RH + + + N+G+P V K + HES T Y + ++
Sbjct: 468 RHTVGTRMINNGMPQHIVQKFLGHESPEMTSRYAHIFD 505
>UniRef50_Q5SJN4 Cluster: Integrase/recombinase; n=2; Thermus
thermophilus|Rep: Integrase/recombinase - Thermus
thermophilus (strain HB8 / ATCC 27634 / DSM 579)
Length = 313
Score = 30.7 bits (66), Expect = 7.2
Identities = 15/35 (42%), Positives = 21/35 (60%)
Frame = +3
Query: 3 RHYLSSNLYNSGVPLQKVAKLMNHESSASTKHYLN 107
RH ++ L GV L V L+ HES A+T+ YL+
Sbjct: 263 RHAYATLLVERGVELDAVKDLLGHESIATTQIYLH 297
>UniRef50_A0LFM3 Cluster: Phage integrase family protein; n=1;
Syntrophobacter fumaroxidans MPOB|Rep: Phage integrase
family protein - Syntrophobacter fumaroxidans (strain
DSM 10017 / MPOB)
Length = 189
Score = 30.7 bits (66), Expect = 7.2
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +3
Query: 3 RHYLSSNLYNSGVPLQKVAKLMNHESSASTKHY 101
RH +SNL +SGV V L H+ + +T+ Y
Sbjct: 81 RHSFASNLVSSGVDFYTVGGLRTHKQAVTTQRY 113
>UniRef50_Q8I2T7 Cluster: Putative uncharacterized protein PFI1060w;
n=7; Plasmodium|Rep: Putative uncharacterized protein
PFI1060w - Plasmodium falciparum (isolate 3D7)
Length = 1650
Score = 30.7 bits (66), Expect = 7.2
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +3
Query: 27 YNSGVPLQKVAKLMNHESSASTKHYLNKYN 116
YNS + V KL+N+ S + K+Y NKY+
Sbjct: 127 YNSDTENKDVNKLLNNNSEYNNKNYYNKYD 156
>UniRef50_Q72A00 Cluster: Site-specific recombinase, phage integrase
family; n=1; Desulfovibrio vulgaris subsp. vulgaris str.
Hildenborough|Rep: Site-specific recombinase, phage
integrase family - Desulfovibrio vulgaris (strain
Hildenborough / ATCC 29579 / NCIMB8303)
Length = 309
Score = 30.3 bits (65), Expect = 9.5
Identities = 15/33 (45%), Positives = 17/33 (51%)
Frame = +3
Query: 3 RHYLSSNLYNSGVPLQKVAKLMNHESSASTKHY 101
RH +S L GVPL VA LM H T+ Y
Sbjct: 258 RHTFASWLVQRGVPLYTVADLMGHSVVEMTRRY 290
>UniRef50_Q5WFP9 Cluster: Site-specific tyrosine recombinase; n=1;
Bacillus clausii KSM-K16|Rep: Site-specific tyrosine
recombinase - Bacillus clausii (strain KSM-K16)
Length = 300
Score = 30.3 bits (65), Expect = 9.5
Identities = 12/33 (36%), Positives = 22/33 (66%)
Frame = +3
Query: 3 RHYLSSNLYNSGVPLQKVAKLMNHESSASTKHY 101
RH +++L N+G L+ V +L+ H+S +T+ Y
Sbjct: 249 RHSFATHLLNAGADLRAVQELLGHQSLKTTQVY 281
>UniRef50_Q58WR8 Cluster: Integrase; n=2; uncultured murine large
bowel bacterium BAC 54B|Rep: Integrase - uncultured
murine large bowel bacterium BAC 54B
Length = 419
Score = 30.3 bits (65), Expect = 9.5
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +3
Query: 3 RHYLSSNLYNSGVPLQKVAKLMNHESSASTKHYLN 107
RH + N+ +G ++ VA LM H S T+ YL+
Sbjct: 360 RHSFAVNVLGAGANIKTVASLMGHSSIKMTEKYLH 394
>UniRef50_Q3R024 Cluster: Phage integrase; n=3; Xylella
fastidiosa|Rep: Phage integrase - Xylella fastidiosa
Ann-1
Length = 357
Score = 30.3 bits (65), Expect = 9.5
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +3
Query: 3 RHYLSSNLYNSGVPLQKVAKLMNHESSASTKHY 101
RH +S L+ G +Q+VA+ HES + K Y
Sbjct: 314 RHEATSRLFEKGYSIQEVAQFTLHESWTTLKRY 346
>UniRef50_Q144A9 Cluster: Putative bacteriophage integrase; n=1;
Burkholderia xenovorans LB400|Rep: Putative
bacteriophage integrase - Burkholderia xenovorans
(strain LB400)
Length = 444
Score = 30.3 bits (65), Expect = 9.5
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +3
Query: 3 RHYLSSNLYNSGVPLQKVAKLMNHESSASTKHY 101
RH ++ L GVP++++ K + H S T Y
Sbjct: 380 RHSFATRLAQHGVPIERIGKWLGHSSLQQTMRY 412
>UniRef50_A5D2W6 Cluster: Site-specific recombinase XerD; n=4;
Clostridiales|Rep: Site-specific recombinase XerD -
Pelotomaculum thermopropionicum SI
Length = 306
Score = 30.3 bits (65), Expect = 9.5
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = +3
Query: 3 RHYLSSNLYNSGVPLQKVAKLMNHESSASTKHY 101
RH +++L N+G L+ V +LM H +ST+ Y
Sbjct: 253 RHSFATHLLNAGADLRSVQELMGHVRLSSTQVY 285
>UniRef50_A0M400 Cluster: Tyrosine recombinase XerC; n=4;
Flavobacteriaceae|Rep: Tyrosine recombinase XerC -
Gramella forsetii (strain KT0803)
Length = 296
Score = 30.3 bits (65), Expect = 9.5
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +3
Query: 3 RHYLSSNLYNSGVPLQKVAKLMNHESSASTKHY 101
RH +++L N G L V +L+ H S A+T+ Y
Sbjct: 242 RHSFATHLLNQGANLNAVKELLGHSSLAATQVY 274
>UniRef50_P55632 Cluster: Putative integrase/recombinase y4qK; n=18;
Proteobacteria|Rep: Putative integrase/recombinase y4qK
- Rhizobium sp. (strain NGR234)
Length = 308
Score = 30.3 bits (65), Expect = 9.5
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +3
Query: 3 RHYLSSNLYNSGVPLQKVAKLMNHESSASTKHYL 104
RH + +L +G ++ + L+ H S A+T HYL
Sbjct: 243 RHAFAVHLLEAGADVRTIQLLLGHRSLATTAHYL 276
>UniRef50_P18021 Cluster: Resolvase; n=34; root|Rep: Resolvase -
Escherichia coli
Length = 260
Score = 30.3 bits (65), Expect = 9.5
Identities = 12/33 (36%), Positives = 22/33 (66%)
Frame = +3
Query: 3 RHYLSSNLYNSGVPLQKVAKLMNHESSASTKHY 101
RH + ++ +G+PL+ + LM H+S +ST+ Y
Sbjct: 196 RHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVY 228
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 265,096,668
Number of Sequences: 1657284
Number of extensions: 3817165
Number of successful extensions: 9498
Number of sequences better than 10.0: 58
Number of HSP's better than 10.0 without gapping: 9347
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9498
length of database: 575,637,011
effective HSP length: 89
effective length of database: 428,138,735
effective search space used: 11131607110
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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