Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc9m05
         (348 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          22   2.1  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    21   2.7  
AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory recept...    20   6.3  
AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    20   8.3  

>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 21.8 bits (44), Expect = 2.1
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = -1

Query: 72  DSLIWPLFVKARRYCIS 22
           DSL+W  ++   R C+S
Sbjct: 471 DSLLWHTWMPVMRICVS 487


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 21.4 bits (43), Expect = 2.7
 Identities = 10/28 (35%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = +3

Query: 21  NLYNSGVPLQKVAK-LMNHESSASTKHY 101
           +LY+S +    V + +++ E  +STKHY
Sbjct: 111 DLYDSDIIQDIVPQNVLDEEEKSSTKHY 138


>AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory receptor
           candidate 51 protein.
          Length = 771

 Score = 20.2 bits (40), Expect = 6.3
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -1

Query: 111 ICSSNVWCLRKIRDSLIWPLFVKARRYCIS 22
           IC +  +C   I   LI+ +FV  + YC S
Sbjct: 525 ICKN--FCFGFITKQLIFMIFVTYQLYCWS 552


>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 19.8 bits (39), Expect = 8.3
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = -3

Query: 340 LSRYKKMLFSFLSYTKLNMVSA 275
           L+R+K + +  LSY +L  + A
Sbjct: 390 LARFKCLSWLDLSYNRLGQIDA 411


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 66,593
Number of Sequences: 336
Number of extensions: 1127
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 50
effective length of database: 105,785
effective search space used:  6876025
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)