Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc9m05
         (348 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    21   4.2  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    20   9.6  
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    20   9.6  

>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.0 bits (42), Expect = 4.2
 Identities = 13/44 (29%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = -3

Query: 307 LSYTKLNM-VSAPNNKYKFIFIPLLYSLR*YNNDSPDEPDELRL 179
           + +T+L M +   + + +F  +PL+ S   ++ D  D P+EL L
Sbjct: 210 IEFTELCMKLGWKSARTRFDILPLILSANGHDPDYFDIPNELVL 253


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 19.8 bits (39), Expect = 9.6
 Identities = 9/28 (32%), Positives = 13/28 (46%)
 Frame = -1

Query: 255 SFLFPYSIRCDSTTTILPTNRTNCDYVA 172
           +FLF  S    STT +       C++ A
Sbjct: 120 AFLFQLSFATTSTTIVSGAMAERCNFKA 147


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 19.8 bits (39), Expect = 9.6
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = -2

Query: 116 IVFVQVMFGACG 81
           I+FV   FG CG
Sbjct: 61  IIFVISFFGCCG 72


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 80,003
Number of Sequences: 438
Number of extensions: 1121
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  7936320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)