Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc9m03
         (682 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    26   0.25 
AM292366-1|CAL23178.2|  379|Tribolium castaneum gustatory recept...    25   0.43 
AM292329-1|CAL23141.2|  379|Tribolium castaneum gustatory recept...    25   0.43 
AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory recept...    23   2.3  

>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 26.2 bits (55), Expect = 0.25
 Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
 Frame = +1

Query: 385 PNITDIDNIKLSHMQ---LARLLCYTAVVESRNSKPWKAIFN 501
           P +T  DN+KL  +     A  +  T++VES  + P K IFN
Sbjct: 711 PQVTCPDNMKLEKVPGECCAICVNATSLVESNRNVPQKCIFN 752


>AM292366-1|CAL23178.2|  379|Tribolium castaneum gustatory receptor
           candidate 45 protein.
          Length = 379

 Score = 25.4 bits (53), Expect = 0.43
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = -2

Query: 306 KQVYYRRLYIVFYVVKLNYID 244
           +  YYRRLY + ++V L+Y+D
Sbjct: 65  RHTYYRRLYTITHLV-LDYLD 84


>AM292329-1|CAL23141.2|  379|Tribolium castaneum gustatory receptor
           candidate 8 protein.
          Length = 379

 Score = 25.4 bits (53), Expect = 0.43
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = -2

Query: 306 KQVYYRRLYIVFYVVKLNYID 244
           +  YYRRLY + ++V L+Y+D
Sbjct: 65  RHTYYRRLYTITHLV-LDYLD 84


>AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory receptor
           candidate 48 protein.
          Length = 408

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 6/13 (46%), Positives = 12/13 (92%)
 Frame = -3

Query: 644 LFCKFIWIFSIWY 606
           +FC FI++F+++Y
Sbjct: 146 VFCYFIYLFTVYY 158


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 154,826
Number of Sequences: 336
Number of extensions: 3234
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17801955
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)